Query= MSMg01no045_l08.b1 MSMg01no045_l08.b1 CHROMAT_FILE:
MSMg01no045_l08.b1 PHD_FILE: MSMg01no045_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:43 2005
(478 letters)
>mm_chr2_53064854_53065731
Length = 878
Score = 870 bits (450), Expect = 0.0
Identities = 468/474 (98%)
Strand = Plus / Minus
Query: 5 gaattcaacgtcaaggtagacattctacctaacttcttcaatcacaaagatttaaataag 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattcaacgtcaaggtagatattctacctaacttcttcaatcacaaagatttaaataag 619
Query: 65 atatctggttctgccactagcctatcctggaacaagcctcaagataacttaacagtctgg 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 atatctggttctgccactagcctatcctggaacaagccgcaagataacttaacagtctgg 559
Query: 125 gttttccttgtatacagtaattatatatatagatagatgccgcaatattaagtaatgact 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 gttttccttgtatacagtaattttatatatagatagatgccgcaatattaagtaatgact 499
Query: 185 atacatgcaatttatgtgcttgtttggaactcactcctaagacccaatgaatgagggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atacatgcaatttatgtgcttgtttggaactcactcctaagacccaatgaatgagggaaa 439
Query: 245 caagttggagatgatcatgtgacattgtgggggaaaacagtaaattatacaagattgtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caagttggagatgatcatgtgacattgtgggggaaaacagtaaattatacaagattgtta 379
Query: 305 tactaaattataacctaataacaactatggaatgctatggatacttctcaaaatctaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tactaaattataacctaataacaactatggaatgctatggatacttctcaaaatctaaac 319
Query: 365 ttctgcttcgcaacttaacaatgcaaattccaagtagctaagacaaagttctccatataa 424
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttctgctttgtaatttaacaatgcaaattccaagtagctaagacaaagttctccatataa 259
Query: 425 ttattttataaatctaataaaggaaagttttcacttttacataagactttggga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttattttataaatctaataaaggaaagttttcacttttacataagactttggga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_l08.g1 MSMg01no045_l08.g1 CHROMAT_FILE:
MSMg01no045_l08.g1 PHD_FILE: MSMg01no045_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:43 2005
(545 letters)
>mm_chr2_53037903_53038843
Length = 941
Score = 975 bits (504), Expect = 0.0
Identities = 540/566 (95%), Gaps = 24/566 (4%)
Strand = Plus / Plus
Query: 1 agttatggttagaaaatgagatgtgatagaaaatacaaagacaccgttttcttcagcatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 173 agttatggttagaaaatgagatgtgatagaaaatacaaaggcaccgttttcttcagcatt 232
Query: 61 ttccattaaagtcctggcaggcgaagcttagttacaaacttatttgtgagctttgaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttccattaaagtcctggcaggcgaagcttagttacaaacttatttgtgagctttgaaact 292
Query: 121 tttacgtaactaagtaaatattctaaaagtgaaactgatggtatgaatatgaaactaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttacgtaactaagtaaatattctaaaagtgaaactgatggtatgaatatgaaactaaag 352
Query: 181 aacatctttatgctatgcaagatactgtatttcatacaaaactactattaaaaatttggt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 aacatctttatgctatgcaagattctgtatttcatacaaaactactattaaaaatttggt 412
Query: 241 ttatctggagttctcagcattttgaacatggtagaatgacctatttccctgagcccctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttatctggagttctcagcattttgaacatggtagaatgacctatttccctgagcccctat 472
Query: 301 tatctacttaggaaatgttacaat---------------ga----tt-----cctatttt 336
|||||||||||||||||||||||| || || ||||||||
Sbjct: 473 tatctacttaggaaatgttacaatttattatctacttaggaaatgttacaatcctatttt 532
Query: 337 tattatcctaaacacaaaatacacagggacatttttcatttgctatctctgaagttaagt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tattatcctaaacacaaaatacacagggacatttttcatttgctatctctgaagttaagt 592
Query: 397 tctttacaagcaattggattcagttatactagttacttggcagaacccccaatttgagac 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctttacaagcaattggattcagttatactagttacttggcagaacccccaatttgagac 652
Query: 457 taatgaaattctctgtaatgcattccttttgctgttttaatcagtgttaatgaaagtgaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taatgaaattctctgtaatgcattccttttgctgttttaatcagtgttaatgaaagtgaa 712
Query: 517 tccaggctgtaaatgtacagaaaaaa 542
||||||||||||||||||||||||||
Sbjct: 713 tccaggctgtaaatgtacagaaaaaa 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 941
Length adjustment: 10
Effective length of query: 535
Effective length of database: 931
Effective search space: 498085
Effective search space used: 498085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
