BAC Information

Click to search

BAC

Clone NameMSMg01-046O10
Chromosome2 (Build37)
Map Location 86,847,088 - 86,847,481
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102
Downstream geneOlfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046O10.T7 (MSMg01no046_o10.b1)MSMg01-046O10.TJ (MSMg01no046_o10.g1)
ACCAG277165AG277166
length691678
length of high quality
(start - end)		475 (36 - 510)597 (74 - 670)
definitionCHROMAT_FILE: MSMg01no046_o10.b1 PHD_FILE: MSMg01no046_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:09 2005CHROMAT_FILE: MSMg01no046_o10.g1 PHD_FILE: MSMg01no046_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGC
TGTCTCTCACCTTTTTAAGCTTATGTGGCAATTTTCAGTGCCATGAAAAC
TAGGACTCAAAAGATGAAGAATCAGTTCACTTCCAGCTTACGGAACTATG
AATCTTGCTTCAGAAGTTCATAATGCCTTTGCCAAGGACTTAGTTTATAT
CCCTGGGGACAATTGTAATAGATTGTGTGTTTTAGGATTCCCTTGGGCAA
CCCAGACTCAAAAGAGGGCTTGTCATGTCTCTTATTGAATCTTTTATTAT
GTGGTTTTGAATTTGTGTAGGAGCATTGATAACCCAATTCGAAAAAAGTA
TATAGATGTATGTATATGTATATAAATAAACTTTTTCTGCAAATGTATGT
ATACACCACACACACACACACACACACACACACACACACACACACACACA
GACACACACACACACAGACACACACACACGTATATTGATATCCAGATTTT
GGTGAGGAAAACAGGAAGGGTGGCATTTTGTGAAGTGGAAAGGAGATAAA
TACTGAAGGGAAGTAGTAGGATACAAATGGGTTGGGGAAATGGGGAAAAG
TGGGCTTTTTGGGGGAGCGTGAAGATCAGTAATTAAAGAAAAATGAGGGA
AGATAGTACCCCAATATTGATGATCCCAAGAGACTCCTGAG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGA
GAGTTTGGCTGGGTATAGTAGCCTGGACTGGCATTTGTTTTCTCTTAGTG
TCTGTATAACATCTGTCCAGGATCTTCTGGCTTTCATAGTCTCTGGTGAA
AAGTCTGGTGTAATACTGATAGGCCTGCCTTTAGATGTTACTTGACCTTT
TTCCCTTACTGCTTTTAATATTCTATGTTTATTTAGTGCATTTTTTCTGA
TTATTATGTGTCAGGAGGAATTTCTTTTCTGGTCCAGTGTATATGGAGTT
CTTTAGGCTTTTTGTATGTTCATGGGCATCTCTTTGTTTAGGTTTGGGAA
GTTTTCTTCTATAATTTTATTGAAGATATTTGCTGGCCCTTTAATTTGAA
AATCTTCATTCTCATCTACTCCTATTATCAGGAGGTTTGATCTTCTCATT
GTGTCCTGGATTTCCTGGATGTTTTGAGTTAGCATCTCTTTGCATTTTGC
ATTTTCTTTGTTGTGCTGATGTTCTCTATGGAATCTTCTTCACCTGAGAT
TCTTTCTTCCATCTCTTGTATTCTGTTGCTGATACTCGTATCTATGTTTC
CAGATTTCTTCCCTAGGGTTTCTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_o10.b1 MSMg01no046_o10.b1 CHROMAT_FILE:
MSMg01no046_o10.b1 PHD_FILE: MSMg01no046_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:09 2005
         (475 letters)



>mm_chr2_86846884_86847758
          Length = 875

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggctgtctctcacctttttaagcttatgtggcaattttcagtgccatgaaaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggctgcctctcacctttttaagcttatgtggcaattttcagtgccatgaaaa 264

                                                                       
Query: 65  ctaggactcaaaagatgaagaatcagttcacttccagcttacggaactatgaatcttgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaggactcaaaagatgaagaatcagttcacttccagcttacggaactatgaatcttgct 324

                                                                       
Query: 125 tcagaagttcataatgcctttgccaaggacttagtttatatccctggggacaattgtaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaagttcataatgcctttgccaaggacttagtttatatccctggggacaattgtaat 384

                                                                       
Query: 185 agattgtgtgttttaggattcccttgggcaacccagactcaaaagagggcttgtcatgtc 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agattgtgtgttttaggagtcccttgggcaacccagactcaaaagagggcttgtcatgtc 444

                                                                       
Query: 245 tcttattgaatcttttattatgtggttttgaatttgtgtaggagcattgataacccaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttattgaatcttttattatgtggttttgaatttgtgtaggagcattgataacccaatt 504

                                                                       
Query: 305 cgaaaaaagtatatagatgtatgtatatgtatataaataaactttttctgcaaatgtatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 505 cgaaaaaagtatatagatgtatgtatatgtatataaataaactttttttgcaattgtatg 564

                                             
Query: 365 tatacaccacacacacacacacacacacacacac 398
           ||||||||||||||||||||||||||||||||||
Sbjct: 565 tatacaccacacacacacacacacacacacacac 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |