BAC Information

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BAC

Clone NameMSMg01-046P20
Chromosome2 (Build37)
Map Location 85,246,205 - 85,246,447
singlet/doubletsinglet
Overlap genenone
Upstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992
Downstream geneOlfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046P20.T7 (MSMg01no046_p20.b1)MSMg01-046P20.TJ (MSMg01no046_p20.g1)
ACCAG277231AG277232
length696710
length of high quality
(start - end)
242 (63 - 304)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no046_p20.b1 PHD_FILE: MSMg01no046_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:16 2005CHROMAT_FILE: MSMg01no046_p20.g1 PHD_FILE: MSMg01no046_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATATTCAGTAGTCCGCGGAATTCCAGCTTTA
TGCCATAAAACGTTGTTTCCTAGTGCACCATGGATTTAAACATGTACATT
TGATTTTGAGCAAAACAATATCGATTACTTGTGACTTAGCAATGCAGAAA
ACGTTTAGATAAATTATAAAACAATATGGAATATAGAAAAATTTGAGAGT
AGAGAGAGAATTCATAGACTAAGAGAACTAGCTGTGAAATTGGACATAGG
TGGACAGGTTCCTATAACTTAAAAAGAAATATAAGGATCTCTGTGGCTTG
CTGGTCATCAGTCTATGTACAGGTAAACTAGAGACCCTTGTCAAAGAAAT
AAGGAGCAAGACAACCTACATCATTCTCTGGTGCACATACACACCTGCTC
AGACATAGGCCTATACCATCTACACACAAAATAAAAAGTACCCCCATTAA
AACTCTCAACAGTACCAAAAGGAAAATTATAGGAATTTAGTTATACAAAT
TTGTTTCAACACATATAAATATTAAAGATTCAGTATGTATAATTTTTATG
AATTAATCTAATGGAAATTTTATGAAAGATATGAGCAAGGAAATTGTAGA
AGAAAAACTAAATGTTTAACTGAATATGAAAAGATATACAGCTTACCATT
AATCAGGCAGGTAGATATGAAAGCTTAATTAAAATGGAATTTTATT
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCCCTGCCTTAACCACTTGTT
GACATGTGAAAAGGAACAAAAAGGCTTCTAACACTGGAGAAAGTTCAAGG
CCAGACATACCTTGTAAAGCTGTAATGTGTCCTCCAGTTCTGGTTCCGCC
CTGCGAACGAGGGATCTCCCTTGCACAGGTGTGATGGTAGTTCCCGGGTT
TCTTGGCGCCACTTATTGCCCGAGCTTTTGTCCCCGCCGGCAAGAACACA
CTCAGTACAACCGGAATCTTCTGCGGCAAAGCTTTTATTGCTTACTTATC
AGGAGGGAAGACCCCGAACCAGGAAAATGGCGCTGCTTATATAGCCCGCA
GCATGACGTTTCAGCACCTGATGTGGCATGACAGCTCCTGATTCGTTGCT
TGCCCATCACCCCATTACTTCTTCACCAGATGGGCAGTGACTAGGATGAG
TTCACTCTTGCACTTGCACATAAGGCTTGTTTACTAGTTAGGCGCAGTGG
AAGCCAGCGCCATCTTATAATGGCAATTGCTCACAGCACGCACGCGATTG
CTCACTGCACGGCTCTCCACAATGGCCTAGTCGGCCATCTTTGGAAAGAG
AGGCCCATTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACTCCA
GGCCAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_p20.b1 MSMg01no046_p20.b1 CHROMAT_FILE:
MSMg01no046_p20.b1 PHD_FILE: MSMg01no046_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:16 2005
         (242 letters)



>mm_chr2_85246005_85246647
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtttcctagtgcaccatggatttaaacatgtacatttgattttgagcaaaa-caatat 59
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 ttgtttcctagtgcaccatggatttaaacatgtacatttgattttgagaaaaaccaatat 260

                                                                       
Query: 60  cgattacttgtgacttagcaatgcagaaaacgtttagataaattataaaacaatatggaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgattacttgtgacttagcaatgcagaaaacgtttagataaattataaaacaatatggaa 320

                                                                       
Query: 120 tatagaaaaatttgagagtagagagagaattcatagactaagagaactagctgtgaaatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagaaaaatttgagagtagagagagaattcatagactaagagaactagctgtgaaatt 380

                                                                       
Query: 180 ggacataggtggacaggttcctataacttaaaaagaaatataaggatctctgtggcttgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacataggtggacaggttcctataacttaaaaagaaatataaggatctctgtggcttgc 440

              
Query: 240 tgg 242
           |||
Sbjct: 441 tgg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)