Query= MSMg01no048_a21.b1 MSMg01no048_a21.b1 CHROMAT_FILE:
MSMg01no048_a21.b1 PHD_FILE: MSMg01no048_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:33 2005
(498 letters)
>mm_chr2_14890684_14891581
Length = 898
Score = 717 bits (371), Expect = 0.0
Identities = 414/429 (96%), Gaps = 4/429 (0%)
Strand = Plus / Minus
Query: 5 gaattccttagtggaaacgttagcatatacctgtttcatgttttccaattcgcaggatag 64
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 605 gaattccttagtggaaacgttaggataaacctgtttcatgttttccaatttgcaggatag 546
Query: 65 taaactgcgaagtactctctgatgaacatgatcagcttgatgttgttccttggtgaggtc 124
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taaactgcaaaatactctctgatgaacatgatcagcttgatgttgttccttggtgaggtc 486
Query: 125 tggagtggctgagcactgttgcctttctaagaaacatctgcaatgtgcgcacctgtggtt 184
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cggagtggctgagcactgttgactttctaagaaacatctgcaatgtgcgcacctgtggtt 426
Query: 185 acctagctgcaagcttcagttgtgatgacaaggctgggccagagaggtggcccactcttg 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 425 acctagctgcaagcttcagttgtgatgacaaggctgggccagagaagtggcccactcttg 366
Query: 245 tggaagatcatcatgctaggggtttctgcatcaacacaaaagttcaggtgtttaaaattg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tggaagatcatcatgctaggggtttctgcatcaacacaaaagttcaggtgtttaaaattg 306
Query: 305 tgcctggagttctctctttaacgattatttaaaaagacataaaaaaagcttattcttcca 364
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 tgcctggagttctctctttaatgattatttaaaaagaaataaaaaaagcttattcttcca 246
Query: 365 agtaaggcaatgtattgttaaactttacagaa-caatacagctagctctctctctctctc 423
||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||
Sbjct: 245 agtaaggcaatgtattgttaaactttaca-aagcaatacagc--gctctctctctctttc 189
Query: 424 tctctctct 432
|||||||||
Sbjct: 188 tctctctct 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_a21.g1 MSMg01no048_a21.g1 CHROMAT_FILE:
MSMg01no048_a21.g1 PHD_FILE: MSMg01no048_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:33 2005
(559 letters)
>mm_chr2_14728325_14729284
Length = 960
Score = 1011 bits (523), Expect = 0.0
Identities = 550/559 (98%), Gaps = 4/559 (0%)
Strand = Plus / Plus
Query: 1 ataagtctttcagggccaaactggcaatagaaaccgattcataaagaaatagcgtggtca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 201 ataagtctttcagggccaaactggcaatagaaacagattcataaagaaataatgtggtca 260
Query: 61 aagaatcctcacccccatctcttatttttcctagaattgtttacatgggaggtttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatcctcacccccatctcttatttttcctagaattgtttacatgggaggtttttttt 320
Query: 121 tttt-gtcttttttttttattagattttatatacatttcaaatgctatccagaaagttcc 179
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgtcttttttttt-attagattttatatacatttcaaatgctatccagaaagttcc 379
Query: 180 ctataccctccccccaccctgcttccctacccacccactcccacttcttggccctggcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctataccctccccccaccctgcttccctacccacccactcccacttcttggccctggcat 439
Query: 240 tcccctgtactggggtatataaagtttgcaa-taccaaggggcctctcttcccagtgaag 298
||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||
Sbjct: 440 tcccctgtactggggtatataaagtttgcaagt-ccaatggtcctctcttcccagtgaag 498
Query: 299 gccgactaggccatcttttgctacatatgcagctagagacacgagctctgggggtactgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gccgactaggccatcttttgctacatatgcagctagagacacgagctctgggggtactgg 558
Query: 359 ttagttcatattgttgtttacatgggagcttttatatttacagttaaaattatctttcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttagttcatattgttgtttacatgggagcttttatatttacagttaaaattatctttcca 618
Query: 419 ttcattgcaatattcactttaagtatgtttcatccacttccgggtgatgaaatacaaagg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcattgcaatattcactttaagtatgtttcatccacttccgggtgatgaaatacaaagg 678
Query: 479 gataatttcaattctttcacttggttgactgtgatatgcatgagtttaacgtgccatctc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gataatttcaattctttcacttggttgactgtgatatgcatgagtttaacgtgccatctc 738
Query: 539 caaatgaagttttgggggg 557
|||||||||||||||||||
Sbjct: 739 caaatgaagttttgggggg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
