BAC Information

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BAC

Clone NameMSMg01-048F04
Chromosome2 (Build37)
Map Location 88,182,666 - 88,183,414
singlet/doubletsinglet
Overlap geneOlfr1177
Upstream geneOlfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176
Downstream geneOlfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F04.T7 (MSMg01no048_f04.b1)MSMg01-048F04.TJ (MSMg01no048_f04.g1)
ACCAG278118AG278119
length1,2651,244
length of high quality
(start - end)		836 (52 - 887)749 (87 - 835)
definitionCHROMAT_FILE: MSMg01no048_f04.b1 PHD_FILE: MSMg01no048_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:08 2005CHROMAT_FILE: MSMg01no048_f04.g1 PHD_FILE: MSMg01no048_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATTATNNNNNNNGACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGCCCATGCCTAAACCTGTTAAAAGCAATCTAGAGCAA
ACCAGCAGCCAAAATCAAAGTAAATTGTGAGAAGCTGGAAGCAATCCCAC
TAAAATCAGTGACTAGACAAGGCTGCCCACTTTCTCCCAACCTATTCAAC
ATAGTACTTGAAGTCCTAGCCAGAGCAATTTGACAACAAAAGGAGATCAA
GGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACCCTAAAAATTCCACTAGAGAACTTCTA
AACCTGGTAAACAGCTTCAGTGAAGTAGTTGGATATAAAATTAACTCAAA
AAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA
ATAGGGAACCAACACCCTTCACAATATCACAAATAATATAAAATACCTTG
GTGTGACTCTAACTAAGGCAGGGACAGATCTGTATGATAAGAACTTCAGG
TCTCTGAAGAAAGAACTTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTCATTAATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGGCAA
AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCCATTC
TTCAACAAACTAGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAA
ACCTAGGATAGCAAAAACTCTTCTCAAGGATTAAAAAAAAAAAAGAAAAC
CTCTGGTGCAATCACCATGACTGACCTAAAGCTGTACTACAGAGAAATTG
TGATAAAAACTGCATGGTACTGGTATAGCAACAGACAAGTAGACCAATGG
AATAGAATTTGAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT
CTTTGACATGGGAGCTAAAACCATCCCGTGGAAAAAAGACGCATTTTTCA
CAAATGGTGCTGGCACAACTGCCGATTATTATGGTAAAAAAAGGCGAAAC
GAACCCATTCCTAAGTCCCTTGTAAAAAGGTCAAATCTAAGGGGATTAAG
GAACCCTTCTTAAAACCAGAAAAGGGGAAATCTTATAAAGAAAAAAGGGG
GGAAAAACCCCTCAAAATATTGGTCCAGGCGGAAAATTTCTTCAATAAAA
ACAATTGGCTTTGTGTGTTTTAATCTCAATAACACACACGGACCTCCCTT
AATCTAAAAAGTCCG

TATATATNNNNNNAAGATGTNTAGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAGCTTGTTACTTCCAAAAGA
AATGTTGTAATTTGTTTATTAATAATGATTTAATAACAAACTGATTCAAC
TAAAACTTTCTAAGTTTTTAAAAAATAAACATTAATATATCAAAAATCAT
GTACTTTATATATAGCTACATATCAACTATTTAATATCTGGGAGACTGTA
AATCAGAGATGCTAATGCATTTGACTAAATGCTCTGCCAAATAATATATA
CATATAAATAAAATAGTATTTTGAACAAGAAATAATGTTTGGGTGGTGAA
ATAACAATAAAAATGAACTGTATTTACCACATAAGACCTTATATTTTGAA
ACCCCAAAATCTTAAAACAGTCGATAGTAGATACAGTGTAAATTATAATT
CTGACACTGTAATTGATGGGTCTGCTATGTAGAAGAAAACAGAAGTACAC
ACATAACTATATTACAGGTAATCCACCCCTATAGAATTAGATTTGGGATC
CACTTTATAGGAAGGCATCCATACCTGATAATGTAAAACTTCCAAGCTGT
ATTAGTGTATGGTATTGTATCTTTAGGGAGATTTAATCCTGATGCTTAGC
ATGAAATCACCTTTTAAATATATATATGCATATATATCTATACAGAACAA
TCATTAACGGTCTTAATCAGTGAAATATCTCTTTCTAATTAACTTCAGTA
AAGGCTGTTTTACAGCTATAAAATGTACAGAAATAAGTGATGGTTTAATA
CTGACAACTAAAGTTATATGTATTTGAGGGTAGGTATCTCAAGGTATTTC
ATGAGATATAAATTGAAATGACTGGTGATCTGCAATGAGAAATGGATGAG
CATATGTTCATGTTAGAATATCTAATTTGTTGGTTCCCTTTAAATCCTCT
GTGGATTTAGCCCTTGTAATTAACATTATGTAAAACAATGTGACAATGAT
ATGCCTAAGCAAGTTTTCTCTTACATTGATGAACTGACTTGATTTTAAAC
AATTACCCCCGTTTTCTATTCTACTTAAATAAAAGTCCTAAAAGGGCTTT
CTACTAACCCCCTTTGGCATTTAATAATCTTTCTCCACACCCTGGTTCCT
TCCCCCTGAAAGTCACTTTAGATACCCCTATATAAAAAACAACAAATTAC
TTTTCTTAATCCTTTTACCCTCTATCAGAAATCTGTGTGTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f04.g1 MSMg01no048_f04.g1 CHROMAT_FILE:
MSMg01no048_f04.g1 PHD_FILE: MSMg01no048_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:08 2005
         (749 letters)



>mm_chr2_88182466_88183614
          Length = 1149

 Score = 1386 bits (717), Expect = 0.0
 Identities = 741/749 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttccaaaagaaatgttgtaatttgtttattaataatgatttaataacaaactgatt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 949 ttacttccaaaagaaatgttgtaatttgtttattagtaatgatttaataacaaactgatt 890

                                                                       
Query: 61  caactaaaactttctaagtttttaaaaaataaacattaatatatcaaaaatcatgtactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 caactaaaactttctaagtttttaaaaaataaacattaatatatcaaaaatcatgtactt 830

                                                                       
Query: 121 tatatatagctacatatcaactatttaatatctgggagactgtaaatcagagatgctaat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 829 tatatatagctacatatcaactatttaatatctgggagtctgtaaatcagagatgctaat 770

                                                                       
Query: 181 gcatttgactaaatgctctgccaaataatatatacatataaataaaatagtattttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gcatttgactaaatgctctgccaaataatatatacatataaataaaatagtattttgaac 710

                                                                       
Query: 241 aagaaataatgtttgggtggtgaaataacaataaaaatgaactgtatttaccacataaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 709 aagaaataatgtttgggtggtgaaataacaataaaaatgaactgtatttaccacctaaga 650

                                                                       
Query: 301 ccttatattttgaaaccccaaaatcttaaaacagtcgatagtagatacagtgtaaattat 360
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 649 ccttatattttgaaaccccaaaatcttaaaacagtagatagtagatatagtgtaaattat 590

                                                                       
Query: 361 aattctgacactgtaattgatgggtctgctatgtagaagaaaacagaagtacacacataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aattctgacactgtaattgatgggtctgctatgtagaagaaaacagaagtacacacataa 530

                                                                       
Query: 421 ctatattacaggtaatccacccctatagaattagatttgggatccactttataggaaggc 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 529 ctatattagaggtaatccacccctatagaattagatttgggatccactttataggaagga 470

                                                                       
Query: 481 atccatacctgataatgtaaaacttccaagctgtattagtgtatggtattgtatctttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atccatacctgataatgtaaaacttccaagctgtattagtgtatggtattgtatctttag 410

                                                                       
Query: 541 ggagatttaatcctgatgcttagcatgaaatcaccttttaaatatatatatgcatatata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 409 ggagatttaatcctgatgcttagcatgaaatcaccttttaaatatatatgtgcatatata 350

                                                                       
Query: 601 tctatacagaacaatcattaacggtcttaatcagtgaaatatctctttctaattaacttc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctatacagaacaatcattaacggtcttaatcagtgaaatatctctttctaattaacttc 290

                                                                       
Query: 661 agtaaaggctgttttacagctataaaatgtacagaaataagtgatggtttaatactgaca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtaaaggctgttttacagctataaaatgtacagaaataagtgatggtttaatactgaca 230

                                        
Query: 721 actaaagttatatgtatttgagggtaggt 749
           |||||||||||||||||||||||||||||
Sbjct: 229 actaaagttatatgtatttgagggtaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space:   841721
Effective search space used:   841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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