BAC Information

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BAC

Clone NameMSMg01-048F08
Chromosome2 (Build37)
Map Location 88,182,713 - 88,183,423
singlet/doubletsinglet
Overlap geneOlfr1177
Upstream geneOlfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176
Downstream geneOlfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F08.T7 (MSMg01no048_f08.b1)MSMg01-048F08.TJ (MSMg01no048_f08.g1)
ACCAG278126AG278127
length1,2771,275
length of high quality
(start - end)		775 (44 - 818)713 (70 - 782)
definitionCHROMAT_FILE: MSMg01no048_f08.b1 PHD_FILE: MSMg01no048_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:09 2005CHROMAT_FILE: MSMg01no048_f08.g1 PHD_FILE: MSMg01no048_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAAACACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATGCCTAAACCTGTTAAAAGCAATCTAGAGCAAACCAGCA
GCCAAAATCAAACTAAATTGTGAGAAGCTGGAAGCAATCCCACTAAAATC
AGTGACTAGACAAGGCTGCCCACTTTCTCCCAACCTATTCAACATAGTAC
TTGAAGTCCTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCCACTAGAGAACTTCTAAACCTGG
TAAACAGCTTCAGTGAAGTAGTTGGATATAAAATTAACTCAAAAAAGTCA
ATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAAATAGGGA
ACCAACACCCTTCACAATATCACAAATAATATAAAATACCTTGGTGTGAC
TCTAACTAAGGCAGGGACAGATCTGTATGATAAGAACTTCAGGTCTCTGA
AGAAAGAACTTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TTAATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGGCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCCATTCTTCAACA
AACTAGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGG
ATAGCAAAAACTCTTCTCAAGGATTAAAAAAAAAAAAGAAAACCTCTGGT
GCCATCACCATGACTGACCTAAAGCTGTACTACAGAGAAATTGTGATAAA
AACTGCATGTTCCTGGTATAGCAACAGACAAGTAGACCAATGGAATAGAA
ATGAAGACCCCGAAATGAACCCACACACCTATGGTCACTTGATCCTTGAC
ATGTAAGCTAAAACCATCCAGTGGAAAAAAGAAAGCATTTTTCACAAATG
GTGCTTGGCCAACGGGCGATTATTATGTAAAAGAAAGCCAACCGAACCCT
TCCTATGTCCTGTGTACAAGGTCAATTCTAAATGTATTTAGGAAATCTAC
TTTAAACCCAGAAAGGGGGAAATTTATGAGGAAAAAAGGGGTAAAACCTC
CAAAATATGGTTCCCGGGAAAAATTTCCTTAAAAACACACATGGGTTTGG
GTTTAATAATAAAAACCCTTAGTGACACCTTTATTTAATATCTCTTTAAG
GTTAAAACCGCCATAATATATTTTTTA

NNNTTTTACACGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCTTGCTTGTTACTTCCAAAAGAAATGTT
GTAATTTGTTTATTAGTAATGATTTAATAACAAACTGATTCAACTAAAAC
TTTCTAAGTTTTTAAAAAATAAACATTAATATATCAAAAATCATGTACTT
TATATATAGCTACATATCAACTATTTAATATCTGGGAGACTGTAAATCAG
AGATGCTAATGCATTTGACTAAATGCTCTGCCAAATAATATATACATATA
AATAAAATAGTATTTTGAACAAGAAATAATGTTTGGGTGGTGAAATAACA
ATAAAAATGAACTGTATTTACCACATAAGACCTTATATTTTGAAACCCCA
AAATCTTAAAACAGTCGATAGTAGATACAGTGTAAATTATAATTCTGACA
CTGTAATTGATGGGTCTGCTATGTAGAAGAAAACAGAAGTACACACATAA
CTATATTAGAGGTAATCCACCCCTATAGAATTAGATTTGGGATCCACTTT
ATAGGAAGGCATCCATACCTGATAATGTAAAACTTCCAAGCTGTATTAGT
GTATGGTATTGTATCTTTAGGGAGATCTAATCCTGATGCTTAGCATGAAA
TCACCTTTTAAATATATATATGCATATATATCTATACAGAACAATCATTA
ACGGTCTTAATCAGTGAAATATCTCTTTCTAATTAACTTCAGTAAAGGCT
GTTTTACAGCTATAAAATGTACAGAAATAAGTGATGGTTTAATACTGACA
ACTAAAGTTATATGTATTTGAGGGTAGGTATCTCTAGGTATTTCATGAGA
TATAAATTGAAATGACTGGTGATCTGCAATGAAAAATGGATGCACCCATC
TTCCTGTTAGAATATCTAATTTGTTGGTTCCCCTTTAAATCCTCTGTGGA
ATTAAATCCTTGTAATTACTATTATGTAAAATAATGTTGACCTTGAATCG
CTAATGAAAGCTATCTTCCTAAATCGAAGCAACTTACCTGTTTTTTATAC
CAAATCCCTGGTTACTTATTCTTCTATATTAATATTCTTATAAGCGTAAA
TTTCTCTTTCCCCAATTTTTCATTGATAATCTTTTCCCATTCTTTGTGTC
TCTCTCTTTACTTCCCACTCAATACCTGTTTAACAATAATCTAACATAAC
CTTTTCTATTCCTCTGAATTCTTTATACTCATCTACTCAATATAATATGT
CTTATACTTTTCNTTATTACCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f08.g1 MSMg01no048_f08.g1 CHROMAT_FILE:
MSMg01no048_f08.g1 PHD_FILE: MSMg01no048_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:09 2005
         (713 letters)



>mm_chr2_88182511_88183623
          Length = 1113

 Score = 1321 bits (683), Expect = 0.0
 Identities = 704/711 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcttgcttgttacttccaaaagaaatgttgtaatttgtttattagtaatgatttaataac 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tcttgcttgttacttccaaaagaaatgttgtaatttgtttattagtaatgatttaataac 854

                                                                       
Query: 63  aaactgattcaactaaaactttctaagtttttaaaaaataaacattaatatatcaaaaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaactgattcaactaaaactttctaagtttttaaaaaataaacattaatatatcaaaaat 794

                                                                       
Query: 123 catgtactttatatatagctacatatcaactatttaatatctgggagactgtaaatcaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 793 catgtactttatatatagctacatatcaactatttaatatctgggagtctgtaaatcaga 734

                                                                       
Query: 183 gatgctaatgcatttgactaaatgctctgccaaataatatatacatataaataaaatagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gatgctaatgcatttgactaaatgctctgccaaataatatatacatataaataaaatagt 674

                                                                       
Query: 243 attttgaacaagaaataatgtttgggtggtgaaataacaataaaaatgaactgtatttac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 attttgaacaagaaataatgtttgggtggtgaaataacaataaaaatgaactgtatttac 614

                                                                       
Query: 303 cacataagaccttatattttgaaaccccaaaatcttaaaacagtcgatagtagatacagt 362
           ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 613 cacctaagaccttatattttgaaaccccaaaatcttaaaacagtagatagtagatatagt 554

                                                                       
Query: 363 gtaaattataattctgacactgtaattgatgggtctgctatgtagaagaaaacagaagta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtaaattataattctgacactgtaattgatgggtctgctatgtagaagaaaacagaagta 494

                                                                       
Query: 423 cacacataactatattagaggtaatccacccctatagaattagatttgggatccacttta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cacacataactatattagaggtaatccacccctatagaattagatttgggatccacttta 434

                                                                       
Query: 483 taggaaggcatccatacctgataatgtaaaacttccaagctgtattagtgtatggtattg 542
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taggaaggaatccatacctgataatgtaaaacttccaagctgtattagtgtatggtattg 374

                                                                       
Query: 543 tatctttagggagatctaatcctgatgcttagcatgaaatcaccttttaaatatatatat 602
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 tatctttagggagatttaatcctgatgcttagcatgaaatcaccttttaaatatatatgt 314

                                                                       
Query: 603 gcatatatatctatacagaacaatcattaacggtcttaatcagtgaaatatctctttcta 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcatatatatctatacagaacaatcattaacggtcttaatcagtgaaatatctctttcta 254

                                                              
Query: 663 attaacttcagtaaaggctgttttacagctataaaatgtacagaaataagt 713
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attaacttcagtaaaggctgttttacagctataaaatgtacagaaataagt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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