BAC Information

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BAC

Clone NameMSMg01-048H20
Chromosome2 (Build37)
Map Location 47,166,771 - 47,167,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048H20.T7 (MSMg01no048_h20.b1)MSMg01-048H20.TJ (MSMg01no048_h20.g1)
ACCAG278242AG278243
length1,2351,242
length of high quality
(start - end)		694 (76 - 769)723 (85 - 807)
definitionCHROMAT_FILE: MSMg01no048_h20.b1 PHD_FILE: MSMg01no048_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:29 2005CHROMAT_FILE: MSMg01no048_h20.g1 PHD_FILE: MSMg01no048_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCTATGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTAAGCTCTGCACCCTTTATTTAATGGGGTTATTTGATATTTTTG
AGTCCTCCTTCTTGAGTTCTTTATATATATTGGATATTAGTACCCTATCT
GATTTAGGATAGATAAAGAACCTTTCACAATCTGTTGGTGGCCTTTTTGT
CTTATTGATGGTGTGTTTTGCCTTACAGAAGCTTTGTAATTTTATGAGGT
CCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGAAATTTTTCCCTGTGCCCATATCTTCGAGGCTTTCCCCCACTTTCTCC
TGTATAAATTTCACTGTTTCTGGTTTTATGTGGAGTTCTTTGATCCACGT
AGATTTCACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTC
TACATGGTAACCACCAGTCATGCCAGCACCTTTGTTGAAAATGCTGTCTC
TTTTCCACTGGATGATTTTAGCTCCTGGTCAAAGATCAAGTGACCATAGG
TGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATCGGTCGACTTGT
CTGTCGCTATACCAGTACCATGCACTTTTTATCACAATTGCTCTGTAGTA
CAGCTTTAGGTCAGGCATGGTGATTCCACCATAGGTTCTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAG
ATTACCCTTACTAATTTGTTGAAGAATCGAGTTGGAATTTTGATGTTGAT
TGCTTTGAATCTGTATATTTGTTTTAGAAAGATACTCATTTTTACTATAT
TGATCCTGCCAATCCTTGATCTTGGAAAATTTTTCCTTCCTCTGATATCT
TCTTCTATTCTCTTCTCCAATATTTGAAGTTCTTATCTTACTTAATCTTT
TCCTTTTTTTTATTATATTTCCTCCCTGGTATTTTTTTTTTATTTTGGAA
CTTTGTAAAATTTGTTTGTTTTCTCTATTTTTTTTCTCTTGTCTTATTTT
CTTTTATTATTTAATAATTTCTCTTTGTCTTTTTTCTTTTATTTTCTCTT
TTCCCGTATTTTTTTTTTTTTTGAGTTCCCCTTCTTTTTATTTTTATTTC
TCTACTTTCTTTTATTTTTTCTTTTTACTTATTTTTTCTTTATTCTCTTT
TTCTTGTCCTCTTTACTTTTCTACATTCTTCTACC

AATTTTTNNNNNTAAGATGGGATGCTGGGGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCAAGAATATCTTCACAACAT
TCCTACTAATCTAAAAACATTTCAAAACTGAAAAAAATTTTTAAAGTAAA
ACATATAAAAACCCTCAGCTACATATGTCTAATAAGCATAATGACATATT
TATTTTCCATACAGTTGCCAAATTATTTTTTCTACTACATGCAGACCTGA
ATAGAATTACAGATAAGTTGTGAGCACAGGATTAAAGGGATGCTACACGG
GCATCTAGCATTTAGAACTCTCTAGAATTTCATACAAAACCACAATTCCC
CATCAAAAAACCTTTAGGAGGAGCTGGAATGTACTATTCAGAGTATTTGA
AATCCTAGGAAAGAAGATACAGAGCAGCGTTCATGAGGGCAGATGTAGCA
CTGTCTAAGGACCATCTTGAAATATTTTGGTCCACGATTTATTTTGCCAT
GCCCAAGCTGTGGATATTTATTTCAGTCTTAAGAGTGGGTTATCTACAGG
GCAGTGGTGTTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG
TGGATTTTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGGAT
AGCCAGAGCTATAAAAAGTGGGTTATCAAGATGCAAATTCTAAGATAACA
GGATGTATGTACATTTGCATACCAAGAATGTCCACAAATTACCATCAACC
AGTTATTGTTCCCCTTGCCTTCTGCCCTAAGTCCGTATACAATTCCACAG
CAATGGACTTGCTTTAACCTCAGACACAGCATGTACATGCGGTCTAGTCA
TTGTTTTTATATAGGCAAACACCATAATCAAAAATAATATTCCTTTGTTA
TATTGTCACCATTCTGTGTCTTTTGCCTGATTGGGGTGATCTGTCTCCTT
CTCTTGTTTTTATCCTTTAGGAATGTCACAGGCTTAATTCAGGGTACTTT
TATGAAGACAAAGTAAACCAACCCCAATTTTGGTCCCCAGGTTTTCGAAA
AAAAGGCTTCCTTTATAAAAAAATATATATTCCCCCCAAAATTAAAAAAA
ACCCAAAACCCTTTTTGGGGAAATCCCGGGTTCCCTCCCCCCTAATTTTT
GGAAGAGGGGACCCTCTATATTTAAATGGGCGAACCAAAAGAATATTCTC
TTTTAAAATTTTTTAAAATTTTTAATTGCGCCCTTCCTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_h20.g1 MSMg01no048_h20.g1 CHROMAT_FILE:
MSMg01no048_h20.g1 PHD_FILE: MSMg01no048_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:29 2005
         (723 letters)



>mm_chr2_47166571_47167693
          Length = 1123

 Score = 1352 bits (699), Expect = 0.0
 Identities = 717/727 (98%), Gaps = 8/727 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatcttcacaacattcctactaatctaaaaacatttcaaaactgaaaaaaattttt-- 58
           ||||||||||||||||||||||||||||||||| |||||||||||||||    |||||  
Sbjct: 201 aatatcttcacaacattcctactaatctaaaaatatttcaaaactgaaa----ttttttt 256

                                                                       
Query: 59  --aaagtaaaacatataaaaaccctcagctacatatgtctaataagcataatgacatatt 116
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaaagtaaaacatataaaaaccctcagctacatatgtctaataagcataatgacatatt 316

                                                                       
Query: 117 tattttccatacagttgccaaattattttttctactacatgcagacctgaatagaattac 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tattttccatacagttgccaaattattttttctactacatgcagacctgaatagaattac 376

                                                                       
Query: 177 agataagttgtgagcacaggattaaagggatgctacacgggcatctagcatttagaactc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agataagttgtgagcacaggattaaagggatgctacacgggcatctagcatttagaactc 436

                                                                       
Query: 237 tctagaatttcatacaaaaccacaattccccatcaaaaaacctttaggaggagctggaat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctagaatttcatacaaaaccacaattccccatcaaaaaacctttaggaggagctggaat 496

                                                                       
Query: 297 gtactattcagagtatttgaaatcctaggaaagaagatacagagcagcgttcatgagggc 356
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtactattcagagtagttgaaatcctaggaaagaagatacagagcagcgttcatgagggc 556

                                                                       
Query: 357 agatgtagcactgtctaaggaccatcttgaaatattttggtccacgatttattttgccat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agatgtagcactgtctaaggaccatcttgaaatattttggtccacgatttattttgccat 616

                                                                       
Query: 417 gcccaagctgtggatatttatttcagtcttaagagtgggttatctacagggcagtggtgt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcccaagctgtggatatttatttcagtcttaagagtgggttatctacagggcagtggtgt 676

                                                                       
Query: 477 tgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttttgagttcaaggc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttttgagttcaaggc 736

                                                                       
Query: 537 cagcctggtctacagagtaagttccaggatagccagagctataaaaagtgggttatcaag 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cagcctggtctacagagtaagttccaggatagccagagctataaaaagtgggttatcaag 796

                                                                       
Query: 597 atgcaaattctaagataacaggatgtatgtacatttgcataccaagaatgtccacaaatt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atgcaaattctaagataacaggatgtatgtacatttgcataccaagaatgtccacaaatt 856

                                                                       
Query: 657 accatcaaccagttattgttccccttgccttctgccctaagtccgtatacaattccacag 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 accatcaaccagttattgttccccttgccttctgccctaagtccgtatacaattccacag 916

                  
Query: 717 caatgga 723
           |||||||
Sbjct: 917 caatgga 923


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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