Query= MSMg01no048_i14.b1 MSMg01no048_i14.b1 CHROMAT_FILE:
MSMg01no048_i14.b1 PHD_FILE: MSMg01no048_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:35 2005
(706 letters)
>mm_chr2_66594598_66595703
Length = 1106
Score = 1230 bits (636), Expect = 0.0
Identities = 672/684 (98%)
Strand = Plus / Minus
Query: 20 aagaacatatgacaacccattgatagaatgactttacacatggccaaattttacatattt 79
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 903 aagaacatatgacaacttattgatagaatgactttacacatggccatattttacacattt 844
Query: 80 actattttacaggcaccaaaccgaaaatgttgacttccccagagccgaagggccttgtcc 139
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 actattttacaggtataaaaccgaaaatgttgacttccccagagccgaagggccttgtcc 784
Query: 140 catttacaacagagtcacttgaacttatagaaaatcacattgctaaaaagtgcaatgaag 199
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 783 catttacaacagagtcacttgaacttatagaaaatcacattgctaaaaaatgcaatgaag 724
Query: 200 agcctgaagaagaagaaggtttaaaaccaagttgtaatctagaagctggcaaaagacttc 259
| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 723 accccgaagaagaagaaggtttaaaaccaagtcgtaatctagaagctggcaaaagacttc 664
Query: 260 caattccctatggaaccctccctcgaggaaccgtgtcagagcccttggaagatgtggatc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caattccctatggaaccctccctcgaggaaccgtgtcagagcccttggaagatgtggatc 604
Query: 320 catactactatgttaagagaaatgtaagtattaactgttatcattgaagctatattttac 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 catactactatgttaagagaaatgtaagtattaactgttatcattgaagctatattttac 544
Query: 380 ttcgcttatattcagccacttgaaatgtaattgagataagacttaaagaaaattaataga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttcgcttatattcagccacttgaaatgtaattgagataagacttaaagaaaattaataga 484
Query: 440 gaaggcattctttcataatctattctttgtgggggtcaacatgctcaagatagttaaacc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaaggcattctttcataatctattctttgtgggggtcaacatgctcaagatagttaaacc 424
Query: 500 tgataaaatatctgagtaatatattatggttaatgaccgtagtatatatactgctattcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgataaaatatctgagtaatatattatggttaatgaccgtagtatatatactgctattcc 364
Query: 560 ttaatataagtggctattgtgaaaatatgctaattaccattttctgattagcaattttaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttaatataagtggctattgtgaaaatatgctaattaccattttctgattagcaattttaa 304
Query: 620 aacaatcatgaaatatttagaatatggacagaaatttcaaataccttgataacttactag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aacaatcatgaaatatttagaatatggacagaaatttcaaataccttgataacttactag 244
Query: 680 tcaaaatagtacatttatttttaa 703
|||||| |||||||||||||||||
Sbjct: 243 tcaaaacagtacatttatttttaa 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_i14.g1 MSMg01no048_i14.g1 CHROMAT_FILE:
MSMg01no048_i14.g1 PHD_FILE: MSMg01no048_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:36 2005
(681 letters)
>mm_chr2_66436622_66437702
Length = 1081
Score = 1239 bits (641), Expect = 0.0
Identities = 670/685 (97%), Gaps = 11/685 (1%)
Strand = Plus / Plus
Query: 2 tctttcctgaagcctttccttcagttagcacattctgacaataacagctgcgctctcccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctttcctgaagcctttccttcagttagcacattctgacaataacagctgcgctct---- 257
Query: 62 c-----aacggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaatt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 -ttaagaacggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaatt 316
Query: 117 aactttactgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aactttactgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgt 376
Query: 177 aatatcacatctgtaagaatggagaacaaatggaaatgaagacaaactgtttttaaataa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatatcacatctgtaagaatggagaacaaatggaaatgaagacaaactgtttttaaataa 436
Query: 237 tatgaagggaacagaacagacttgcgggattttttcaacgtcaaacgatttattttaaga 296
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 437 tatgaagggaacagaacagacttgtgggatttttttaacgtcaaacgatttattttaaga 496
Query: 297 aaatacaatttatagttgactatacacaagttttcaccctgatacttgtatttaaacatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatacaatttatagttgactatacacaagttttcaccctgatacttgtatttaaacatc 556
Query: 357 agcttcctaacacaaatggaagtgcatttacagaacagtgtttttactggaccttctgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agcttcctaacacaaatggaagtgcatttacagaacagtgtttttactggaccttctgtg 616
Query: 417 tcagtcttttattattattactatttcttatcttatttttattggttattgtatttattt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcagtcttttattattattactatttcttatcttatttttattggttattgtatttattt 676
Query: 477 atttttcaaatgttgttgcccctcttcccttcctggtctcctctctgcaaactatccatc 536
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 677 atttttcaaatgttgttgcccctcttcccttcctggtctcttc-ctgcaaagtatccatc 735
Query: 537 ccacctcccctcccctttacctctaagagggtgctcccccacctacctacctactcccac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccacctcccctcccctttacctctaagagggtgctcccccacctacctacctactcccac 795
Query: 597 ctcacctctctagcatccccctacactggggtatcaagcctccacagtaccaagctcctc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctcacctctctagcatccccctacactggggtatcaagcctccacagtaccaagctcctc 855
Query: 657 ctctcccattgatgccaaataaggc 681
|||||||||||||||||||||||||
Sbjct: 856 ctctcccattgatgccaaataaggc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
