BAC Information

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BAC

Clone NameMSMg01-048I22
Chromosome2 (Build37)
Map Location 47,166,772 - 47,167,532
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048I22.T7 (MSMg01no048_i22.b1)MSMg01-048I22.TJ (MSMg01no048_i22.g1)
ACCAG278294AG278295
length1,2521,258
length of high quality
(start - end)		682 (76 - 757)761 (87 - 847)
definitionCHROMAT_FILE: MSMg01no048_i22.b1 PHD_FILE: MSMg01no048_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:38 2005CHROMAT_FILE: MSMg01no048_i22.g1 PHD_FILE: MSMg01no048_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNAACATTGGGCGCTATACATCCTAAGGGAGAGGATCCGCGGAATTC
TTTGTTAAGCTCTGCACCCTTTTTTAATGGGGTTATTTGATATTTTTGAG
TCCTCCTTCTTGAGTTCTTTATATATATTGGATATTAGTACCCTATCTGA
TTTAGGATAGATAAAGAACCTTTCACAATCTGTTGGTGGCCTTTTTGTCT
TATTGATGGTGTGTTTTGCCTTACAGAAGCTTTGTAATTTTATGAGGTCC
CATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
AAATTTTTCCCTGTGCCCATATCTTCGAGGCTTTCCCCCACTTTCTCCTG
TATAAATTTCACTGTTTCTGGTTTTATGTGGAGTTCTTTGATCCACGTAG
ATTTCACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTA
CATGGTAACCACCAGTTATGCCAGCACCTTTGTTGAAAATGCTGTCTCTT
TTCCACTGGATGATTTTAGCTCCTGGTCAAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATCGGTCGACTTGTCT
GTCGCTATACCAGTACCATGCACTTTTTATCACAATTGCTCTGTAGTACA
GCTTTAGGTCAGGCATGGTGATTCCACCATAGGTTCTTTTATCCTTGAGA
AGAGTTTTTGCTATCCTAGGTTCTTTGTTATTCCAGATGAATTTGCAGAT
TACCCTCTACTAATTTGTTGAAGAATTGAGTTGGAATTTTGATGTGGATT
GCATTGAATCTTGCGATTGTTTTTAGAATGATAGCCTTTTTTACTACTTT
GATTCTGCCTTTCCTTGAGCATGGTAGAATTTTTCATCCTCTGAGATCTT
CTTTCATTTTCTTTCTTCATAAATTTGATTTTCTTTACAATTTTATACTT
CACTTTTTATTTTTTGTTTCTTCCCAGTTTTTTTTATTTTTTTTTTTCTT
TTTAAAATGTTTTTTTTTTCTCTATTTTTTTTTCTCTTTTTTATTATTCT
CTTTTTTTTAATTCTTCTTTTTTTCTTTTTATTTCTTTTTTTTTATTTCC
TTTCTTTTCTCTTTTATTTCTTCTTTTTTTTTTTTTTTTTTCTTTCTTTT
TTTATATTTTATTTNATATTATCTTTTTATTTTTTTTTCCTTCTTCTTTA
TCTTTCTATTATCTTCTTTCCTTTCCTTTCTTCCTATCTCTTTTCTATTC
TA

ATTTTTTTNNNNNNAGCAGGNAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTAGAATATCTTCACAACA
TTCCTACTAATCTAAAAATATTTCAAAACTGAAAAACATTTTTAAAGTAA
AACATATAAAAACCCTCAGCTACATATGTCTAATAAGCATAATGACATAT
TTATTTTCCATACAGTTGCCAAATTATTTTTTCTACTACATGCAGACCTG
AATAGAATTACAGATAAGTTGTGAGCACAGGATTAAAGGGATGCTACACG
GGCATCTAGCATTTAGAACTCTCTAGAATTTCATACAAAACCACAATTCC
CCATCAAAAAACCTTTAGGAGGAGCTGGAATGTACTATTCAGAGTATTTG
AAATCCTAGGAAAGAAGATACAGAGCAGCGTTCATGAGGGCAGATGTAGC
ACTGTCTAAGGACCATCTTGAAATATTTTGGTCCACGATTTATTTTGCCA
TGCCCAAGCTGTGGATATTTATTTCAGTCTTAAGAGTGGGTTATCTACAG
GGCAGTGGTGTTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG
GTGGATTTTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGGA
TAGCCAGAGCTATAAAAAGTGGGTTATCAAGATGCAAATTCTAAGATAAC
AGGATGTATGTACATTTGCATACCAAGAATGTCCACAAATTACCATCAAC
CAGTTATTGTTCCCCTTGCCTTCTGCCCTAAGTCCGTATACAATTCCACA
GCAATGGACTTGCTTTAACCTCAGACACAGCATGTACATGCGGTCTAGTC
ATTGTTCTTATATAGGCAAACACCAAAATCAAAAATAATATTCCTTTGTT
ATATTGTCACCATTCTGTGTCTTTTGCCTGATTGGGTTGATCTGCCCCCT
TCTCCTGGTTTTAACTTTTAAGGATGTCCCAGGCTTTATCAAGGGTCTTT
TTTTGAGAACAAATTATACAAACCTCAAATTTAGTTCCAGCTCCCCTGAA
AAAAAGTCTTCTTCTTAAAAAACAAATTTCTCCCCCTTATATAAAAAAAA
CCCACAACCCTTTTGGGTGAAGTCCGGTTTTTTCCCCTCTTTTTTTTTGA
AAGGGGAGCCCCCTCTTTAAAAAATTGTGACAACATAAAAAATTTCTTTT
TAAAAATTAAAAATTTTTTAAGTGTGCCCTCCCCACTAAAATTATTTTTT
GATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_i22.g1 MSMg01no048_i22.g1 CHROMAT_FILE:
MSMg01no048_i22.g1 PHD_FILE: MSMg01no048_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:38 2005
         (761 letters)



>mm_chr2_47166572_47167732
          Length = 1161

 Score = 1425 bits (737), Expect = 0.0
 Identities = 755/765 (98%), Gaps = 8/765 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcttcacaacattcctactaatctaaaaatatttcaaaactgaaaaacattttt--- 57
           ||||||||||||||||||||||||||||||||||||||||||||||||    |||||   
Sbjct: 201 atatcttcacaacattcctactaatctaaaaatatttcaaaactgaaa----tttttttt 256

                                                                       
Query: 58  -aaagtaaaacatataaaaaccctcagctacatatgtctaataagcataatgacatattt 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaagtaaaacatataaaaaccctcagctacatatgtctaataagcataatgacatattt 316

                                                                       
Query: 117 attttccatacagttgccaaattattttttctactacatgcagacctgaatagaattaca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attttccatacagttgccaaattattttttctactacatgcagacctgaatagaattaca 376

                                                                       
Query: 177 gataagttgtgagcacaggattaaagggatgctacacgggcatctagcatttagaactct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gataagttgtgagcacaggattaaagggatgctacacgggcatctagcatttagaactct 436

                                                                       
Query: 237 ctagaatttcatacaaaaccacaattccccatcaaaaaacctttaggaggagctggaatg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctagaatttcatacaaaaccacaattccccatcaaaaaacctttaggaggagctggaatg 496

                                                                       
Query: 297 tactattcagagtatttgaaatcctaggaaagaagatacagagcagcgttcatgagggca 356
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tactattcagagtagttgaaatcctaggaaagaagatacagagcagcgttcatgagggca 556

                                                                       
Query: 357 gatgtagcactgtctaaggaccatcttgaaatattttggtccacgatttattttgccatg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gatgtagcactgtctaaggaccatcttgaaatattttggtccacgatttattttgccatg 616

                                                                       
Query: 417 cccaagctgtggatatttatttcagtcttaagagtgggttatctacagggcagtggtgtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cccaagctgtggatatttatttcagtcttaagagtgggttatctacagggcagtggtgtt 676

                                                                       
Query: 477 gcacgcctttaatcccagcacttgggaggcagaggcaggtggatttttgagttcaaggcc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcacgcctttaatcccagcacttgggaggcagaggcaggtggatttttgagttcaaggcc 736

                                                                       
Query: 537 agcctggtctacagagtaagttccaggatagccagagctataaaaagtgggttatcaaga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agcctggtctacagagtaagttccaggatagccagagctataaaaagtgggttatcaaga 796

                                                                       
Query: 597 tgcaaattctaagataacaggatgtatgtacatttgcataccaagaatgtccacaaatta 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgcaaattctaagataacaggatgtatgtacatttgcataccaagaatgtccacaaatta 856

                                                                       
Query: 657 ccatcaaccagttattgttccccttgccttctgccctaagtccgtatacaattccacagc 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ccatcaaccagttattgttccccttgccttctgccctaagtccgtatacaattccacagc 916

                                                        
Query: 717 aatggacttgctttaacctcagacacagcatgtacatgcggtcta 761
           ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 917 aatggacttgctttaacctcagacacatcatgtacatgcggtcta 961


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space:   864401
Effective search space used:   864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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