BAC Information

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BAC

Clone NameMSMg01-049A19
Chromosome2 (Build37)
Map Location 142,216,776 - 142,217,553
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049A19.T7 (MSMg01no049_a19.b1)MSMg01-049A19.TJ (MSMg01no049_a19.g1)
ACCAG278645AG278646
length1,1541,231
length of high quality
(start - end)		738 (52 - 789)779 (84 - 862)
definitionCHROMAT_FILE: MSMg01no049_a19.b1 PHD_FILE: MSMg01no049_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:38 2005CHROMAT_FILE: MSMg01no049_a19.g1 PHD_FILE: MSMg01no049_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGTTTTNNNNNNTTCATTGGCGCTAAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATCAAATGATTTTTCTGCCTTTATTAGGAACTATCACT
GAATTCTATCAAATGATTTTTCTGCATCTATCCAATCTATTGGTGTGATG
TCTTATGTAGTGATTTGAATGGAGAGAATCCTTCATAAGCTCCTGTATTT
GGACACTTGCTACCTGTAGGTGATGCTTTTCAGTGAGATGGTGCAGCCTT
GTGAGGGAAATTGTGTCACTTGATATGGGATTTGGGAGTTCATAGCCTCC
CCTCACTTCCAGTTCATTCTCTCTGCTTCACATGTGCAGTTCACCATCCT
GCCCTGCCTGGCCCTCTGCTGTCATGCCCTCTGCACCATTACAGACTCTG
CAGCTAGAAACAGAAGCCAAAATAATGACTCTTCTTCTGTACAGTGGCTC
ACAGTTTAAGAAGGGATGCAGTCCATCTAGGTGGAGAAAGCCTGGTGCCA
GCAGTGTGAGACAGCTGGACCCATCACATCTGCCATGTCTGTCTAGTATC
CCATAACCTCCTATACATAGATGCCCATGTGATTCCTGATACTAGAGAAG
TTTTCTGATGTTATTCACTGAGTAAATTTCCTGTGTCTTTAATCTTTATC
TCTTCACCTTGGACAATTTCAGTTATGCAGATGTTTGTTCATTTAACAAT
ATCCCAAAGATTTCAGATGATGACCTTGTTCTTTTTTTCTCTTCTTTCCA
AAAAAATAAAACAAAACACAAACAAAAAAAACAAAAAACAGAAAAAGCCT
TAATGCACTATCTCAAAAGACATGTCTTCAAAATAAGATATTATTTCTTA
TGCTTAATCTGTCATTGAGGTTTTCAACTGATTTTTTTTAAAAAAATAAT
TAATTAAACTTACTGGCCTTTTCATTTCCCAGAATTTAAAATTTGGTTTC
TTTTTCAAAGCCGGTCTCTTTCATGAACTTTCCTAATCTTACCCCAAAAT
GGCTTTTGAATTTTATTTTAACTCTGGCATCTTATACTTTTGTTTAAAAT
TTCATTGAAGCTTCTTTATGAAATTCTTTCTTGGCGAAAATTGGCAATAT
TCACGGGATTGTAAACCCCATTTTAACATTTTCTCTTGTGGAACTCTGGC
CCAC

NCCACTTTTNTNNNTAGCAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCTCCCCGTTTCTTAACCT
ATCCCCACACAAGATGACCCAACACAACGGCTGCCATTGGTAATGAGAAA
GGTGGCCTGGAATTGTCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTG
CCTTCCCACTGTGACCCTATAATGGAGGCTGAGTTATACTTCCCCATAGA
GTTATGGGGAAATGCCTTTCCAGCATGGTTCTTTTGTCAGGCACTTCACA
AAAGTGATGGGTGCTTGTAAAATATGAAGATGGCAGGAAACATTGAAGCT
ATCTATCTGGATGGTATCCTTAGATTATTTAGAGGAAGAGTTGTTCTAGA
AAACAACACGTAATGGAGAGGTATATGCTGTCATGTCAAACTGTAGAAAG
AGAGAGAGAAAAAAATGAGCAAAAGCCATGGGGAAACTTTATGAAATTCC
TGAAATAGCCTTGTTGTTATGTTGATGAACTGTGTTAATGAAAAGAAGAG
CTGTTAAAAGGTAACATATGCAGAGGTGTGGTTTGCTACTTACTTTATTA
TACCAAATAAATTACCTAGAAACAGAAACTAATGCAGAGCAGGCAAAACT
AGTCATAGAAAGGTAAGATGGATTTTCCACAGGAAAGGGCCAAACTAGCA
AACTGGATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGA
TATCCTCTCTCAGCTCCATGTTCCCCATTTTGTTAGGAATAGCAACATAA
AACATTACAATTCTAAAACACTAGGGTGTTAACATGATATGCAAAAGACA
CTACCATGTCTTTAGATCCCCCAGAGGCAGTGGGAGACCTAGGATTGTTC
TGGGATGGATAGTTGGGAAGGATGCCCAGCCTCCTCTGGTCCTCATTGCT
TGAGCTACCACTGTTCCACTGGCTTCCTTAAGTCATGTATAGTTCTGGCT
AAAGTTTTGAATGAAGTGGAGGAACTTGCCAATCCCCCTTGGAATTTGGC
ATAATAAAACCAGAAATTCCGGCTATAAAAGAAAGGGTTTCAAAGGCCCC
TAACTTTTAGGGGTGAACCCCCTGTGAACAAGCCAATTTTTGTGCCCCCT
GTGAATTTTTTTTTATTAAAAAAAAAACTTTTCAGGGGGAACTTCTGAAA
ATTACAATTGTTTTATAAATAAATAAAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_a19.g1 MSMg01no049_a19.g1 CHROMAT_FILE:
MSMg01no049_a19.g1 PHD_FILE: MSMg01no049_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:38 2005
         (779 letters)



>mm_chr2_142216576_142217753
          Length = 1178

 Score = 1421 bits (735), Expect = 0.0
 Identities = 768/779 (98%), Gaps = 1/779 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccgtttcttaacctatccccacacaagatgacccaacacaacggctgccattggtaa 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 978 tccccgtttcttaacctatccccacacaagatgaccaaacacaacggctgccattggtaa 919

                                                                       
Query: 61  tgagaaaggtggcctggaattgtctcagttctggctattcctcttatctcaggtgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tgagaaaggtggcctggaattgtctcagttctggctattcctcttatctcaggtgtgcct 859

                                                                       
Query: 121 tcccactgtgaccctataatggaggctgagttatacttccccatagagttatggggaaat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 858 tcccactgtgaccctataatggaggctgagttatacttccccatggagttatggggaaat 799

                                                                       
Query: 181 gcctttccagcatggttcttttgtcaggcacttcacaaaagtgatgggtgcttgtaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcctttccagcatggttcttttgtcaggcacttcacaaaagtgatgggtgcttgtaaaat 739

                                                                       
Query: 241 atgaagatggcaggaaacattgaagctatctatctggatggtatccttagattatttaga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 738 atgaagatggcaggaaacattgaagctatctatctgggtggtatccttagattatttaga 679

                                                                       
Query: 301 ggaagagttgttctagaaaacaacacgtaatggagaggtatatgctgtcatgtcaaactg 360
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggaggaattgttctagaaaacaacacgtaatggagaggtatatgctgtcatgtcaaactg 619

                                                                       
Query: 361 tagaaagagagagagaaaaaaatgagcaaaagccatggggaaactttatgaaattcctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagaaagagagagagaaaaaaatgagcaaaagccatggggaaactttatgaaattcctga 559

                                                                       
Query: 421 aatagccttgttgttatgttgatgaactgtgttaatgaaaagaagagctgttaaaaggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatagccttgttgttatgttgatgaactgtgttaatgaaaagaagagctgttaaaaggta 499

                                                                       
Query: 481 acatatgcagaggtgtggtttgctacttactttattataccaaataaattacctagaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acatatgcagaggtgtggtttgctacttactttattataccaaataaattacctagaaac 439

                                                                       
Query: 541 agaaactaatgcagagcaggcaaaactagtcatagaaaggtaagatggattttccacagg 600
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 438 agaaactaatgcagagcaggcaaaactagtcataggaaggtaagatg-attttccacagg 380

                                                                       
Query: 601 aaagggccaaactagcaaactggatgagatacttataaagtggtatcatcccactgttaa 660
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaagggccaaactagcaaattggatgagatacttataaagtggtatcatcccactgttaa 320

                                                                       
Query: 661 ctttagatatcctctctcagctccatgttccccattttgttaggaatagcaacataaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttagatatcctctctcagctccatgttccccattttgttaggaatagcaacataaaac 260

                                                                      
Query: 721 attacaattctaaaacactagggtgttaacatgatatgcaaaagacactaccatgtctt 779
           ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 259 attacaattctaaaacagtagggtgttaagatgatatgcaaaagacacgaccatgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1178
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1168
Effective search space:   898192
Effective search space used:   898192
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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