BAC Information

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BAC

Clone NameMSMg01-049E12
Chromosome2 (Build37)
Map Location 31,512,305 - 31,545,098
singlet/doubletdoublet
Overlap geneExosc2
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12
Downstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049E12.T7 (MSMg01no049_e12.b1)MSMg01-049E12.TJ (MSMg01no049_e12.g1)
ACCAG278791AG278792
length1,2291,256
length of high quality
(start - end)		738 (89 - 826)723 (86 - 808)
definitionCHROMAT_FILE: MSMg01no049_e12.b1 PHD_FILE: MSMg01no049_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:07 2005CHROMAT_FILE: MSMg01no049_e12.g1 PHD_FILE: MSMg01no049_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,544,361 - 31,545,098)(31,512,305 - 31,513,026)
sequence
CCCGACCTTTTNNNNNACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTTCCAGGGTAATTAGCTTGTAAGTCATGTAACCGCA
ATGCCAAAAGTTTCTTCAATCTCCGTCTACGTTGCGAGCTGAGGAACACT
TTCTTTGCAAGAGGGGAACTTTAGATAAAACTATTCACAGAAAAGTCAGA
AAAGGGCCAACGGCACTGAAAGTCATTTCAACTCCCCAGCGAGAAGCAAA
GGCTGAGCTGCTTTTATATTCTCTGCAATCTTTTCTGTGGAAGTCAACCA
ATCCCCTATCTCTGTCTCTCCATCTTGTAACAAATTTCCTGCCGCTCTCA
CTTCCCTGCCCTGCTCTCCGGAAAAATGACACGGGTCACACAGATCTCAT
CGAGAGCTTGCTCTCCACTCTGCCGAGAACAAATGCATGACCAGCAACTT
TTAAGTCCGCTTTTTAAAAGGCCTGTGAAACCAATCCAGACTTTTCCTTT
GCATTAAAGTTTTGGGCTGCACTGTGACCAAGGGGGCTGTAGGTGACATT
GGAAGAAGTCAGGACATCGGAGGCCGGCGAAAGCAATCTGGGAGGACGCC
CCGAAGATCTCTTGACAGCAGGGAGATGGTTTGAATGAGGGACTCCGTGG
CACACTTGGGGTTGAAATCGAGCGAAAGGCGGTCTCGGGGTGAGAAAGAG
ACTTCCCAGGCAGGGCGCGGGAGGCTTATTCGGCGGCGACGCTCCTCCTC
AGGAAACAGGGTGTTCCAGGTAAGGAGAACCAGAGACCACTCTGGGTGTC
CCAGAGCCAGAGCAGGACTAGGAGGGACGAAGGATTCCCGCGGTCCCGGA
CCTGGAGGCAGCCACAGGGGAAGGAGGCCCGGCGCCTCAGCTGCCCCGAG
CCCAAAGGGTCTCTACCCCAGAACCCCCTCCCCGGGAACGGGCCCTGCCA
ACGCCGCCGAGCAGTCCCTTGCCGGGTCAATCCAGGAAACCGGGTTTCTC
CAGCCATGGAGGGTCGGTGCCGCGTTAAGAATCCTCCGCCCCAGGACCCG
GGCCCCGGTTTCAGTTCCAAGGCCTTTAAGGAGAGCACCCGAACCCCGGA
GCCGCCCCTAAGGGATTAAAAACCCGGCCCCCCTAAGGTCAAGCCCCCCC
CCCCCAACCCCCCCCCCGGAAAGCGTGAATTCCCCCAAGGAGGATCTCAA
TAAACCATGGGCGCGTGTTCTCCCTCCCC

CGTTTTTTTTTNNAAGCATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTACTTGCCATAGAAGCCATC
CCTCTTTGGAAGTTGCCCCCGTGGCATGCATGGCCAAAGAAAGACCCTTA
TACTTTGGGAGTCGTGGCACAGAGGGGCCACTGGCACGTTAGCTTGCAGG
TCCCATGACTTTTCTCTGGGACTCCTCCCTCTTAAGCCTTTCCCTCCTTC
GTATAGAAGGAAGGAAGCATTTTCTTTGTTGTTTTTGTCATTTTCAGACA
GTCTCCCTGTGTAGCCCTGGCTGTCCTAGAACTCACTGTCACAGAGCATT
GTCTGTCTCTACTGCCAGAGTGCTCGGATTAAAGATGTGTGCCACCATGC
CTGGCCAAAAGAAAGCATTTTACTGAGGCTTACTGACAGTTGGAGAGGGT
TATTAATGATTGTCATGATGGGAAGTAGACAGGTGTGGTGCTATAGCAAC
AGCTGAGAGCTTTATAGACTGAGCCACAAGCAGCAAAAGGGACATTGGGC
CTGGCGTGGGCTTTGGAAGCTTCAAAGTTCACTCCCAGTGACACACCTCT
TCCAACAAAGTCACACTTCCTATCCTTCCCAAACAGTTCATCAGCCATGG
ACTAAGCATTCAAATATATGAGCGTGTGGAGGGAGGGAGATACTCATTCC
GGCCGCCACCCCCTGATGCCAGAATGCTTTACATTACTTTATTTCTTTTC
TAGTTTTTGAGATGGGCTCGTCTATCCGTCCCATGCTGATCTTAAACTCA
CTATGTACCCCAGGCTGGCTTTGAACACAAAGCAATCCTGCTGCCTCAGC
TTCCTTGAAAACTGAAATGACTGTCATATGTCACCCTGGACAGCAAGTTC
TCTCCTGACGGACCAAATGTTAGTCCAGGAAATCTTTTCCTCTTCCTCTT
TCTCCTCCTCCTCATCTTCTATCTCCTCTTCTTCCTCCTCCTCTTCCCCT
GCTCATTTTTCTAACAATAAGGAACCAAGCCTCCGTGGGCATCCACCCCC
CCTAAGAATAAGTTTTAACCCCTTCCCAGGGCTGACCGGATATTCTTTTT
TCTCTCTGGGAATCCCTTAACAAAAGTTTCTTAAATATGGGTGCATGGTT
CCTAATATTTTTAAACACCATCCCCCCCTTTTATCCTGGGTGAACTTTGT
GGGCAAAAAATAATATATTTGGTGGGCTCTGGCTTATTCATATGAGTAAG
GGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_e12.b1 MSMg01no049_e12.b1 CHROMAT_FILE:
MSMg01no049_e12.b1 PHD_FILE: MSMg01no049_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:07 2005
         (738 letters)



>mm_chr2_31544161_31545298
          Length = 1138

 Score = 1381 bits (714), Expect = 0.0
 Identities = 732/738 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaaccgcaatgccaaaagtttcttcaatctccgtctacgttgcgagctgaggaaca 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 938 catgtaaccgcaatgccaaaagtttcttcaatctaagtctacgttgcgagctgaggaaca 879

                                                                       
Query: 61  ctttctttgcaagaggggaactttagataaaactattcacagaaaagtcagaaaagggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ctttctttgcaagaggggaactttagataaaactattcacagaaaagtcagaaaagggcc 819

                                                                       
Query: 121 aacggcactgaaagtcatttcaactccccagcgagaagcaaaggctgagctgcttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aacggcactgaaagtcatttcaactccccagcgagaagcaaaggctgagctgcttttata 759

                                                                       
Query: 181 ttctctgcaatcttttctgtggaagtcaaccaatcccctatctctgtctctccatcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttctctgcaatcttttctgtggaagtcaaccaatcccctatctctgtctctccatcttgt 699

                                                                       
Query: 241 aacaaatttcctgccgctctcacttccctgccctgctctccggaaaaatgacacgggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aacaaatttcctgccgctctcacttccctgccctgctctccggaaaaatgacacgggtca 639

                                                                       
Query: 301 cacagatctcatcgagagcttgctctccactctgccgagaacaaatgcatgaccagcaac 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 638 cacagatctcatcgagagcttgctctccactctgccgagaagaaatgcatgaccagcaac 579

                                                                       
Query: 361 ttttaagtccgctttttaaaaggcctgtgaaaccaatccagacttttcctttgcattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttttaagtccgctttttaaaaggcctgtgaaaccaatccagacttttcctttgcattaaa 519

                                                                       
Query: 421 gttttgggctgcactgtgaccaagggggctgtaggtgacattggaagaagtcaggacatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gttttgggctgcactgtgaccaagggggctgtaggtgacattggaagaagtcaggacatc 459

                                                                       
Query: 481 ggaggccggcgaaagcaatctgggaggacgccccgaagatctcttgacagcagggagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaggccggcgaaagcaatctgggaggacgccccgaagatctcttgacagcagggagatg 399

                                                                       
Query: 541 gtttgaatgagggactccgtggcacacttggggttgaaatcgagcgaaaggcggtctcgg 600
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 398 gtttgaatgagggactccgtggcaaacttggggttgaaatcgagcgaaaggcggtctcgg 339

                                                                       
Query: 601 ggtgagaaagagacttcccaggcagggcgcgggaggcttattcggcggcgacgctcctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 338 ggtgagaaagagacttcccaggcagggcgcgggaggcttattcgggggcgacgctcctcc 279

                                                                       
Query: 661 tcaggaaacagggtgttccaggtaaggagaaccagagaccactctgggtgtcccagagcc 720
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 278 tcaggaaacagggtgttccaggtaaggagaaacagagaccactctgggtgtcccagagcc 219

                             
Query: 721 agagcaggactaggaggg 738
           ||||||||||||||||||
Sbjct: 218 agagcaggactaggaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space:   821184
Effective search space used:   821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no049_e12.g1 MSMg01no049_e12.g1 CHROMAT_FILE:
MSMg01no049_e12.g1 PHD_FILE: MSMg01no049_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:08 2005
         (723 letters)



>mm_chr2_31512105_31513227
          Length = 1123

 Score = 1319 bits (682), Expect = 0.0
 Identities = 712/722 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatagaagccatccctctttggaagttgcccccgtggcatgcatggccaaagaaagac 60
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 201 gccatagaagccatccctctttggaagttgccagtgtggcatgcatggccaaagaaagac 260

                                                                       
Query: 61  ccttatactttgggagtcgtggcacagaggggccactggcacgttagcttgcaggtccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttatactttgggagtcgtggcacagaggggccactggcacgttagcttgcaggtccca 320

                                                                       
Query: 121 tgacttttctctgggactcctccctcttaagcctttccctccttcgtatagaaggaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacttttctctgggactcctccctcttaagcctttccctccttcgtatagaaggaagga 380

                                                                       
Query: 181 agcattttctttgttgtttttgtcattttcagacagtctccctgtgtagccctggctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 agcattttctttgttgtttttgtcattttcagacagtctccctgtgtagccctgggtgtc 440

                                                                       
Query: 241 ctagaactcactgtcacagagcattgtctgtctctactgccagagtgctcggattaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaactcactgtcacagagcattgtctgtctctactgccagagtgctcggattaaaga 500

                                                                       
Query: 301 tgtgtgccaccatgcctggccaaaagaaagcattttactgaggcttactgacagttggag 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgccaccatgcctggctaaaagaaagcattttactgaggcttactgacagttggag 560

                                                                       
Query: 361 agggttattaatgattgtcatgatgggaagtagacaggtgtggtgctatagcaacagctg 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agggttattaatgattgtcatgatgggaagcagacaggtgtggtgctatagcaacagctg 620

                                                                       
Query: 421 agagctttatagactgagccacaagcagcaaaagggacattgggcctggcgtgggctttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagctttatagactgagccacaagcagcaaaagggacattgggcctggcgtgggctttg 680

                                                                       
Query: 481 gaagcttcaaagttcactcccagtgacacacctcttccaacaaagtcacacttcctatcc 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gaagcttcaaagttcactcccagtgacacacctcctccaacaaagtcacacttcctatcc 740

                                                                       
Query: 541 ttcccaaacagttcatcagccatggactaagcattcaaatatatgagcgtgtggagggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcccaaacagttcatcagccatggactaagcattcaaatatatgagcgtgtggagggag 800

                                                                       
Query: 601 ggagatactcattccggccgccaccccctgatgccagaatgctttacattactttatttc 660
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggagatactcattcaggccgccaccccctgatgccagaatgctttacattactttatttc 860

                                                                       
Query: 661 ttttctagtttttgagatgggctcgtctatccgtcccatgctgatcttaaactcactatg 720
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 861 ttttctagtttttgagatgggctcgtctatatgtcccatgctgatcttaaactcactatg 920

             
Query: 721 ta 722
           ||
Sbjct: 921 ta 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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