Query= MSMg01no049_h08.b1 MSMg01no049_h08.b1 CHROMAT_FILE:
MSMg01no049_h08.b1 PHD_FILE: MSMg01no049_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:29 2005
(772 letters)
>mm_chr2_8706080_8707251
Length = 1172
Score = 1400 bits (724), Expect = 0.0
Identities = 757/768 (98%)
Strand = Plus / Plus
Query: 5 gaattctttctttagctctgtacctcattttttaatggggctatttgaatttctggagtt 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgtacctcattttttaatggggctatttgaatttctggagtt 264
Query: 65 cagcttcttgaattctttgtatatattggatattagtcaagccagggcattttcttaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcttcttgaattctttgtatatattggatattagtcaagccagggcattttcttaagt 324
Query: 125 gctaattcctgttggtagacccagcctgagaggtaaccttcctagacaggtgggtgtggc 184
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 325 gctaattcctgttggtagacccagcctgaaaggtacccttcctagacaggtgggtgtggc 384
Query: 185 cattgcagaaaatagaggtaaatgtgagtttggagcaagcaatactcaccagggttactg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 cattgcagaaaatagaggtaaatgtgagtttggagcaagcaatactcaccagagttactg 444
Query: 245 cctgagttcctgcttgagagcctggcctcatttccttcaaagatgaaaacattcttgtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgagttcctgcttgagagcctggcctcatttccttcaaagatgaaaacattcttgtaa 504
Query: 305 gtgacaacagcaaaagaattgattgctatgaacttagtcaatgcacttgcagtgctacta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 gtgacaacagcaaaagaattgattgctatgaacttagtcaatgcacttgcagttctacta 564
Query: 365 caagtgagtaaggcacaatgatgaagaaacaactggcttaatgcaaacaaaaaacaaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagtgagtaaggcacaatgatgaagaaacaactggcttaatgcaaacaaaaaacaaaca 624
Query: 425 aaaaagtgaaagtccaaatgtctatatccttcacgattgggaaagatacctaatgacaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaagtgaaagtccaaatgtctatatccttcacgattgggaaagatacctaatgacaag 684
Query: 485 tgaagtagagaaggtaactttgaactcatccctttgccatgaaggttctttttaatttca 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaagtagagaaggtgactttgaactcatccctttgccatgaaggttctttttaatttca 744
Query: 545 ctttgatttttcttccacgattaagaataattgcctaaacaaaaagtagaatgttcctga 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 745 ctttgatttttcttccacgattaagaataattgcataaacaaaaagtagaatgttcctga 804
Query: 605 cttcaagaaatcacaggattttactgctgagagaacatttaacacattgacacttgttat 664
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttcaagaaattacaggattttactgctgagagaacatttaacacattgacacttgttat 864
Query: 665 tgcatgagaaccgctggcccctgatcagacaagaaaaacatggaggatgtcttttctcta 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgcatgagaaccgctggcccctgatcagacaagaaaaacatggaggatgtcttttctcta 924
Query: 725 ctttctcatgagtttcctgaggaaatgatccaaaggacgtacttcctt 772
||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 925 atttctcatgagtttcatgaggaaatgatccaaaggatgtacttcctt 972
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1172
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1162
Effective search space: 885444
Effective search space used: 885444
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_h08.g1 MSMg01no049_h08.g1 CHROMAT_FILE:
MSMg01no049_h08.g1 PHD_FILE: MSMg01no049_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:30 2005
(604 letters)
>mm_chr2_8722713_8723716
Length = 1004
Score = 990 bits (512), Expect = 0.0
Identities = 578/600 (96%), Gaps = 2/600 (0%)
Strand = Plus / Minus
Query: 6 atttgcaataggtattctccttttgcaacctctcaatatttgccttctatgccctgttac 65
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 804 atttgcaataggtattctccttttggaacctctcaatatttgccttctatgccctgttac 745
Query: 66 tcaaatattctcatggttgttaccacacatggaggtcaaagccttccttcaatgctttga 125
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 744 tcaaatattctcatggttgttaccacacatggaggtcaaagccttccttccatgctttga 685
Query: 126 gctgacattgttttagtgtccacagttatacagggtaagtggaacatatgtccttcatcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctgacattgttttagtgtccacagttatacagggtaagtggaacatatgtccttcatcc 625
Query: 186 ctggttttatcccatgcttggctctgcccatttttctggaaatgtagagcaaatggcagc 245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 ctggttttatcccatccttggctctgcccatttttctggaaatgtagagcaaatgacagc 565
Query: 246 agacctaatctctgggattgaga-agggagatgagatttctaacttgctttatcttcata 304
||||||||||||||||||| ||| | || |||||||||||||||||| |||||||||||
Sbjct: 564 agacctaatctctgggattaagaca-ggcgatgagatttctaacttgttttatcttcatc 506
Query: 305 cctttgcaaagagagttgtggagagtctctgggctctcgtgggtcatgctgctggttact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctttgcaaagagagttgtggagagtctctgggctctcgtgggtcatgctgctggttact 446
Query: 365 agctacagtcagtgtttatattcagagcagagagtcattttatgaaaattcatttcatga 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctacagtcagtgtttatgttcagagcagagagtcattttatgaaaattcatttcatga 386
Query: 425 ccattatgaacaagagcagaagtggccttcataatggatactattgattaaaagtgaaag 484
|||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 385 acattatgaacaagaacagaagtggccctcataatggacactgttgattaaaagtgaaag 326
Query: 485 aaacttactataaattgtaaaagcattgcctgtagtgaacatatgttttcttttccatga 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacttactatgaattgtaaaagcattgcctgtagtgaacatatgttttcttttccatga 266
Query: 545 gtatacagcgtatagccattacagattttgctgagactcaggctcctggcataagaagaa 604
||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatacagtgtataaccgttgcagattttgctgagactcaggctcctggcataagaagaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
