Query= MSMg01no049_l17.b1 MSMg01no049_l17.b1 CHROMAT_FILE:
MSMg01no049_l17.b1 PHD_FILE: MSMg01no049_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:03 2005
(616 letters)
>mm_chr2_85812211_85813226
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 613/616 (99%)
Strand = Plus / Plus
Query: 1 atggaaacctcttaatgacacaatgcatttttccttcttagaattcctgcccctagctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggaaacctcttaatgacacaatgcatttttccttcttagaattcctgcccctagctaa 260
Query: 61 atctttacaattatctatgaagtcctgttgagtctgagcccctttcagagtactgactaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 atctttacaattatctatgaagtcttgttgagtctgagcccctttcagagtactgactaa 320
Query: 121 gaaaagtatgtcttttccttactatcctttcatatctttttattgtagatactatataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaagtatgtcttttccttactatcctttcatatctttttattgtagatactatataga 380
Query: 181 ggataagaatgctttttctgttattgcagggtttctcactttttctgtagagctctgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggataagaatgctttttctgttattgcagggtttctcactttttctgtagagctctgctc 440
Query: 241 cctaatctatggctgcttgtgcaccaagtggctaacctgcatgttagattaactaaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaatctatggctgcttgtgcaccaagtggctaacctgcatgttagattaactaaaagg 500
Query: 301 gcatggtttttctctaaatctttttattcttttttccaggtagctactgggatttatacc 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatgatttttctctaaatctttttattcttttttccaggtagctactgggatttatacc 560
Query: 361 ttgtctgccctagggattttttgtcaaactttcataaaattgatatcaagcttccatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtctgccctagggattttttgtcaaactttcataaaattgatatcaagcttccatttg 620
Query: 421 tgtctattcttctatgctttaattaatgagattaaaaagcacaagggaagtcccccattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctattcttctatgctttaattaatgagattaaaaagcacaagggaagtcccccattt 680
Query: 481 ccctggtaccatatggaaacttctgtgggactccccagtgtttccagttgcacaatcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctggtaccatatggaaacttctgtgggactccccagtgtttccagttgcacaatcaag 740
Query: 541 ttgaccaattgtcttgaaaaattactaaaaattagatgtgtttgtacattaggagatata 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaccaattgtcttgaaaaattactaaaaattagatgtgtttgtacattaggagatata 800
Query: 601 tgttttgtagaattgt 616
||||||||||||||||
Sbjct: 801 tgttttgtagaattgt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_l17.g1 MSMg01no049_l17.g1 CHROMAT_FILE:
MSMg01no049_l17.g1 PHD_FILE: MSMg01no049_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:03 2005
(693 letters)
>mm_chr2_85845119_85846211
Length = 1093
Score = 1019 bits (527), Expect = 0.0
Identities = 549/561 (97%), Gaps = 8/561 (1%)
Strand = Plus / Minus
Query: 2 tctcctttaaatgcttgtggtgaataaaaataaccaattacagattttcccctaggaccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 553 tctcctttaaatgcttgtggtgaataaaaataaccaattacagattttcccctaggaatg 494
Query: 62 acccaagggacgtgtatctctagagcaagagcaaactcattaatatttgctaactcttac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acccaagggacgtgtatctctagagcaagagcaaactcattaatatttgctaactcttac 434
Query: 122 aaaagtttattctgacccctattttctgctattttgatagttttgttattgtgattgaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaaagtttattctgacccctattttctgctattttgatagttttgttattgtgattgaat 374
Query: 182 atgacactgtaaagtatataaatacgaaatgactatttggatctcaagtgctagagactg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgacactgtaaagtatataaatacgaaatgactatttggatctcaagtgctagagactg 314
Query: 242 taaggagcaaaatcgtggggctgcacttacttctattccaatgaagacgaatatccagag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taaggagcaaaatcgtggggctgcacttacttctattccaatgaagacgaatatccagag 254
Query: 302 agaaggcaaaagtttccttttaaagatcaccttatggccttttaaaattatatattttta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agaaggcaaaagtttccttttaaagatcaccttatggccttttaaaattatatattttta 194
Query: 362 attataatatggttgaataattttcttcctccccattcctccctccaacctctaccatgt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 attataatatggttgaataattttcttcctccccattcctccctccaacctctaccatgt 134
Query: 422 aaccatgattgctctccctcaaatccatggcatcttttttaactgttgttacatacacac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaccatgattgctctccctcaaatccatggcatcttttttaactgttgttacatacacac 74
Query: 482 acacatacatacatacatacatacatacatacatacatacctacatacataaatacatat 541
| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 73 atacatacatacatacatacatacatacatacatacatac--------ataaatacatat 22
Query: 542 gtatgtccatccgtaatccac 562
||| |||||||||||||||||
Sbjct: 21 gtacgtccatccgtaatccac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
