Query= MSMg01no049_p04.b1 MSMg01no049_p04.b1 CHROMAT_FILE:
MSMg01no049_p04.b1 PHD_FILE: MSMg01no049_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:30 2005
(720 letters)
>mm_chr2_163501204_163502322
Length = 1119
Score = 1346 bits (696), Expect = 0.0
Identities = 714/720 (99%), Gaps = 1/720 (0%)
Strand = Plus / Plus
Query: 1 aactctacaaggttgaaagctatcaccaatttcatcccaagggagtctaaagtttatgcc 60
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aactcgacaaggttgaaagctatcaccaatttcatctcaagggagtctaaagtttatgcc 260
Query: 61 accctggtatagtcagtgtagttacgtagctaaacatattccatagaattttgcctagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctggtatagtcagtgtagttacgtagctaaacatattccatagaattttgcctagat 320
Query: 121 gagttggctgagtgattggacaagtggcagaagtgtacgtgggaacagcctctcactcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttggctgagtgattggacaagtggcagaagtgtacgtgggaacagcctctcactcat 380
Query: 181 aactgccgccaccgtaatttctgttggacttgggattttcttcctctaagataggaacaa 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgccgccgccgtaatttctgttggacttgggattttcttcctctaagataggaacaa 440
Query: 241 gaagcagaagtggagccagggctttgatgtcctcatgatgggcttaaggctgcagagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagcagaagtggagccagggctttgatgtcctcatgatgggcttaaggctgcagagcag 500
Query: 301 acttctgacagcctatcagaggaacaaaattcctgagcagaatggctaatttccttatgt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctgacagcctatcagaggaa-aaaattcctgagcagaatggctaatttccttatgt 559
Query: 361 cttcatttaccattcattaaatgtgttctgctgagcatctgagacacactaaaccccagg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcatttaccatttattaaatgtgttctgctgagcatctgagacacactaaaccccagg 619
Query: 421 gatgcctgctgtcatgcctgacaagcgagaatgcctgtctccttttctactgcccatacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatgcctgctgtcatgcctgacaagcgagaatgcctgtctccttttctactgcccatacc 679
Query: 481 ttgagctaattactggtacagtgttgtgaagataggacccaggacttcttgcatgctagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgagctaattactggtacagtgttgtgaagataggacccaggacttcttgcatgctagg 739
Query: 541 actgcattctaccattgtgctacaaccccagtccacaggttttataaacataaaggggag 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actgcattctaccattgggctacaaccccagtccacaggttttataaacataaaggggag 799
Query: 601 catagagtcattttggcctgcacatgtgctttctatgtggctgaagtgaagggttaaggc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 catagagtcattttggcctgcacatgtgctttctatgtggctgaagtgaagggttaaggc 859
Query: 661 ttcctggaggagaaggcacagaagctgagaccgatgggccaataggcggttaactaggaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ttcctggaggagaaggcacagaagctgagaccgatgggccaataggcggttaactaggaa 919
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1119
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1109
Effective search space: 787390
Effective search space used: 787390
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_p04.g1 MSMg01no049_p04.g1 CHROMAT_FILE:
MSMg01no049_p04.g1 PHD_FILE: MSMg01no049_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:30 2005
(545 letters)
>mm_chr2_163513280_163514223
Length = 944
Score = 955 bits (494), Expect = 0.0
Identities = 531/546 (97%), Gaps = 7/546 (1%)
Strand = Plus / Minus
Query: 1 aagaaagggcaaaaaaggagaagataggaaagtatccttaaaaattgaggctgggcggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aagaaagggcaaaaaaggagaagataggaaagtatccttaaaaattgaggctgggcggcg 636
Query: 61 gtagcgcacgcctttaatcccagcccttgggaggcagaggcaggcggatttctgagttca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtagcgcattcctttaatcccagcccttgggaggcagaggcaggcggatttctgagttcg 576
Query: 121 aggtcagcctggtctacaaagtgagttccaggacagccagggctacacagag-aaaccct 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 575 aggtcagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaaccct 516
Query: 180 gtctcgaaaaacc----aaaaaaaaaaaaaaaaaatttttgagaagattcaagagatgga 235
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 515 gtctcgaaaaaccacaaaaaaaaaaaaaaaaaaaatttt--agaagattcaagagatgga 458
Query: 236 ggaagacagtcttcaagctcaagaagagagtagaatgcatggttgacagccacttaatct 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 ggaagacagtcttcaagctcaagaagagagtagagtgcatggttgacagccacttaatct 398
Query: 296 tgcccaggtctgaaatcccaacacttgggaaggtgaggcagaaggatgttgagttcaagg 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgcccgggtctgaaatcccaacacttgggaaggtgaggcagaaggatgttgagttcaagg 338
Query: 356 acaacctgggctatatagtgaagcgtttttgttaaagagtaatatagaaatatacggtct 415
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 337 acaacttgggctatatagtgaagcgtttttgataaagagtaatatagaaatataaggtct 278
Query: 416 tgtttaactctgactagaaaagtgaatatgtaagtgaaggggagatctttgttaattatt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtttaactctgactagaaaagtgaatatgtaagtgaaggggagatctttgttaattatt 218
Query: 476 gcatgtgagatactaaacataaaaaaactgtgtgtttttgttgtttgtggggttatttgg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gcatgtgagatactaaacataaaaaaactgtgtgtttttgttgtttgtggggttatttgg 158
Query: 536 tgtgtg 541
||||||
Sbjct: 157 tgtgtg 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
