BAC Information

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BAC

Clone NameMSMg01-049P05
Chromosome2 (Build37)
Map Location 87,812,160 - 87,812,885
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157
Downstream geneOlfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049P05.T7 (MSMg01no049_p05.b1)MSMg01-049P05.TJ (MSMg01no049_p05.g1)
ACCAG279199AG279200
length1,1971,234
length of high quality
(start - end)		688 (53 - 740)724 (88 - 811)
definitionCHROMAT_FILE: MSMg01no049_p05.b1 PHD_FILE: MSMg01no049_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:30 2005CHROMAT_FILE: MSMg01no049_p05.g1 PHD_FILE: MSMg01no049_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGTTTTTTTNNNNNACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTCAGTTCTGAGCCCTTTTTTTTAATGGGGTTAT
TTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATT
AGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGG
TGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGA
GTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATT
GCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTT
CCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTGATCCACTTATATTTGACCTTAGTACAAGGAGATAAGTATGGATCT
ATTCGCATTCTTCTACACGATAACCACCAGTTGTGCCAGCACCAATTGTT
GAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGA
TCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTC
CATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGCTTTTATCAC
AATTGCTCTGTAGTAAAGCTTTAGGCCTGGCATGGTGATTCCGCCAGAAG
TTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTCTTTTGTTATTC
CAGACCAATTTGCAAATTGCTCCTTCCAATTTCTTGAATATTTGATTTGN
CATTTTGATGGGGATTGCTTCGAATCTGAAAATTGCTTTTGGCAAGATAG
CCCTTTTTACCAATGTCTATCCCTGCCATTCCTTGAACATGCTAGATCTT
TCCATCTTCCTGAAATTTTCCTTTATCTCTTTCTTCCAAATTTTTATCAT
TTAAACTCTTCTTATTGTAAATTATTCCCTCTATATGAGTTTCATTTTTA
TTGGTATTCTTTTTCTATCTTAATATTTTTACTNTCTCCTTTTTTATTTT
CCTAATTTTTTTGTATGCTCTCCCCTTCCCTTTAATATTTTTTATTGCTC
ATCATTTTGTCGCAAATATTTTTTTTTTCTCAACTTTATAAACTTTCTAC
CTGGTTACTTATTTTCTAATTTTACTCGCTTGTTATTTCTTCTACCT

NCCATTCTTTNNNNNAAACAAGTGAGNCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTATTGAGAAAAGGCT
AGCCACAAACATATTCTGATTATCCAAACATTTTCATAGCAAATAAGTAC
ATGAAACAATTATATTTAGTAAGAACATAAAACAATAACATATTGATAAG
AAAATGACATTGTGAAACTCATATCTTTGAATATTCATTTAATTATCAGG
AATTGTAAGGGAAGAAGACACATTGTTAGATTTTTATTTAATTTTTTAAA
TAAAATGTGACCATCTCTACCCCAAGCAAGCATGGTAAAATAAATTTAAA
CTGTTTTGTTTCACTTTTTAAAAAAGGAAAGTAAACATGTTTTTATTCAT
CAGAAGGCACTAGTAGCAGACAAAAAATAATAACTGCATTCAAGTCAAGC
TTACTGAGTTTATTGACATTATTTAGGTGACCATGTCTGAGGAATAAACT
CGAAGCCAGCCATGTCACTGAAAACTTTGTTCATGAAGGCACATTTCCAG
ATACATGGGATTCAGCCTGGAGATCTCCACTGTTTCTAACACAGACCTCA
CCTTGGCTGTGAACTTGAAATTTCTATGGCTATACACACAGAAGAGGAAT
AAAACAGAACCATTGGAAGATAGAATTCGTGATACCTGCATGGATTGAAG
TGGCCATGAACTGGTCAGTCAGGAAGTCCTTTCTCCCAACCAATCATTGG
TGCTTGTACAACCCTTGGGAGATATAATTTGATTTCTCTTTTCTGCGTCT
TACATCAACCTCAGTATCAAATAAAAGGTAGACAGGACTACAGAAGCCCT
GCACTGGGATGTCAGAATTTCCTTTACTGCCTTATAGCAGTAAAAATTTT
GGTTGAGTCCATCAAAGTCTCTCTCTCCCTGCCTTGATATTTATTAAAAT
ATACCAAAACACAAGTTCATTAAAATGATTAATAATGGCAAGCACGTGCA
TACAGAATATGGAAATTCCCCTTCACCCAGGAATAAAATTTGCCCCCAAA
AAACCCTTTTTACGATTACTTGAATACAAAAAAAAAAAATCCTTAATAAT
TTTGAAAAATAATCGGAAGTAAACCCCATTTCCCTCCGGGTGAAATTTTT
AATCCAAAATAAATATATTTGTTTTTACCAAGAAAAATTTTTAAAGCTAA
TGGGGGATTTTTTAAAAAAAATTATTTTCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_p05.g1 MSMg01no049_p05.g1 CHROMAT_FILE:
MSMg01no049_p05.g1 PHD_FILE: MSMg01no049_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:30 2005
         (724 letters)



>mm_chr2_87811963_87813087
          Length = 1125

 Score = 1253 bits (648), Expect = 0.0
 Identities = 707/728 (97%), Gaps = 8/728 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagaaaaggctagccacaaacatattctgattatccaaacattttcatagcaaataag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgagagaaggctagccacaaacatattctgattatccaaacattttcatagcaaataag 257

                                                                       
Query: 61  tacatgaaacaattatatttagtaagaacataaaacaataacatattgataagaaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacatgaaacaattatatttagtaagaacataaaacaataacatattgataagaaaatga 317

                                                                       
Query: 121 cattgtgaaactcatatctttgaatattcatttaattatcaggaattgtaagggaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cattgtgaaactcatatctttgaatattcatttaattatcaggaattgtaagggaagaag 377

                                                                       
Query: 181 acacattgttagatttttattta---attttttaaataaaatgtgaccatctctacccca 237
           |||||||||||||||||||||||   |||||||  |||||||||||||||||||||||||
Sbjct: 378 acacattgttagatttttatttatttattttttttataaaatgtgaccatctctacccca 437

                                                                       
Query: 238 agcaagcatggtaaaataaatttaaactgttttgtttcactttttaaaaaaggaaagtaa 297
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agcaagcatgataaaataaatttaaactgttttgtttcactttttaaaaaaggaaagtaa 497

                                                                       
Query: 298 acatgtttttattcatcagaaggcactagtagcagacaaaaaataataactgcattcaag 357
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acatgtatttattcatcagaaggcactagtagcagacaaaaaataataactgcattcaag 557

                                                                       
Query: 358 tcaagcttactgagtttattgacattatttag-gtgaccatgtctgaggaataaactcga 416
           |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 558 tcaagcttactgcgtttattgacattatttagag-gaccatgtctgaggaataaactcga 616

                                                                       
Query: 417 agccagccatgtcactgaaaa-ctttgttcatgaaggcacatttccagatacatgggatt 475
           ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct: 617 agccagccatgtcactgaaaacctttgttcatgaaggcgcatctccagatacatgggatt 676

                                                                       
Query: 476 cagcct-ggagatctccactgtttctaacacagacctcaccttggctgtgaacttgaaat 534
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cag-ctaggagatctccactgtttctaacacagacctcaccttggctgtgaacttgaaat 735

                                                                       
Query: 535 ttctatggctatacacacagaagaggaataaaacagaaccattggaagatagaattcgtg 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttctatggctatacacacagaagaggaataaaacagaaccattggaagatagaattcgtg 795

                                                                       
Query: 595 atacctgcatggattgaagtggccatgaactggtcagtcaggaagtcctttctcccaacc 654
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 796 atacctgcatggattgaggtggccatgaactggccagtcaggaagtcctttctcccaacc 855

                                                                       
Query: 655 aatcattggtgcttgtacaacccttgggagatataatttgatttctcttttctgcgtctt 714
           |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 856 aatcattgctgcttgtacaacctttgggagatataatttgatttctcttttctgtgtctt 915

                   
Query: 715 acatcaac 722
           ||||||||
Sbjct: 916 acatcaac 923


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1125
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1115
Effective search space:   796110
Effective search space used:   796110
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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