Query= MSMg01no050_a07.b1 MSMg01no050_a07.b1 CHROMAT_FILE:
MSMg01no050_a07.b1 PHD_FILE: MSMg01no050_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:45 2005
(732 letters)
>mm_chr2_91158794_91159924
Length = 1131
Score = 1361 bits (704), Expect = 0.0
Identities = 725/732 (99%), Gaps = 1/732 (0%)
Strand = Plus / Plus
Query: 1 tgaactcacagagatttgtttcttctgtcagagtgttctcagaatgaactttttatcagc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgaactcacagagatttgtttcttctgtcagagtgtt-tcagaatgaactttttatcagc 259
Query: 61 aaaactgtctgatgagaatttaagaaagctgcagagaacaaaatctaaataagttatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaactgtctgatgagaatttaagaaagctgcagagaacaaaatctaaataagttatttt 319
Query: 121 cctgagccttctactgtcagaggcagccatagaataaacaagatgtgagccaaattatgc 180
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctgagccttccactctcagaggcagccatagaataaacaagatgtgagccaaattatgc 379
Query: 181 atttgatttgcttaaaatgcattctccttttctaaataaatataaacagaagcagtggct 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 atttgatttgcttaaaatgcattctccttttctaaataactataaacagaagcagtggct 439
Query: 241 agtgaggttactcactgagagcagccgaacagagacagactaaaagagcaacaacctagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtgaggttactcactgagagcagccgaacagagacagactaaaagagcaacaacctagg 499
Query: 301 ttctccatgggcatggtaagtagggaggttgttgccagctggtaggcgtacatataaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctccatgggcatggtaagtagggaggttgttgccagctggtaggcgtacatataaaga 559
Query: 361 gcagcgcctgctttctcatcagaatctactaacctccatgtacaatgatgggtttatggc 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gcagcgcctgctttctcatcagaatctactaacttccatgtacaatgatgggtttatggc 619
Query: 421 tacccattttctgaaaaccagacttagaatcagaaacagcaggaaggaggaagagggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tacccattttctgaaaaccagacttagaatcagaaacagcaggaaggaggaagagggctg 679
Query: 481 gatatgggtaaacacacatctcttcagattctgaatccacctttgtatttcctgctgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatatgggtaaacacacatctcttcagattctgaatccacctttgtatttcctgctgttt 739
Query: 541 cctgtcctctgtgggctcatgccatgttctctcctataattatgtgtgtggctaagagca 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 cctgtcctttgtgggctcatgccatgttctctcctataattatgtgtgtggctcagagca 799
Query: 601 gaggcagctaagtcagggaagagtgcctgtctttggggtcagcgtgggaatgaaactgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaggcagctaagtcagggaagagtgcctgtctttggggtcagcgtgggaatgaaactgaa 859
Query: 661 gtcagcagtcccagtcctagagccagcaactttgctctgaagtgtagtttcctggtaaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtcagcagtcccagtcctagagccagcaactttgctctgaagtgtagtttcctggtaaat 919
Query: 721 gatcccttacct 732
||||||||||||
Sbjct: 920 gatcccttacct 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1131
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1121
Effective search space: 809362
Effective search space used: 809362
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_a07.g1 MSMg01no050_a07.g1 CHROMAT_FILE:
MSMg01no050_a07.g1 PHD_FILE: MSMg01no050_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:46 2005
(697 letters)
>mm_chr2_91200683_91201782
Length = 1100
Score = 1027 bits (531), Expect = 0.0
Identities = 567/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 3 ctttgaagctggctgttgaagccaaggattcctgccctgttctccc-ccccgacccccct 61
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 578 ctttgaagctggctgttgaagccaaggattcctgccctgttcccccacccccacccccct 519
Query: 62 gctctgattttaaagacatttctggaaactttcgtatgtggtgggaatgggaaggaagta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 gctctgattttaaagacatttctggaaactttcgtatgtggtgggaatgggaaagaagta 459
Query: 122 agttggcgggtccaaagcgacttttctggacttatagcacctaaagggcttcagatcacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agttggcgggtccaaagcgacttttctggacttatagcacctaaagggcttcagatcacc 399
Query: 182 acttctcaaaaatctgatatggtgaattttcttgactaaagcacacaaagtaggctttgc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acttctcaaaaatctgatatggtgaattttcttgactaaagcacacaaagtaggctttgc 339
Query: 242 aggcaccattggcacttctgaagctgtgtgcacgaagggaa-cccccc-ccaagtccaga 299
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 338 aggcaccattggcacttctgaagctgtgtgcacgaagggaatcccccctccaagtccaga 279
Query: 300 cttgctttgtctctagcagtaggaactagtggacaatctgcagaggacacagttgctggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttgctttgtctctagcagtaggaactagtggacaatctgcagaggacacagttgctggg 219
Query: 360 agcgttagtggtgacagactggggacagccagctcagtgggagagcacatacctcaccta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 218 agcgttagtggtgacagactggggacagccagctcagtgggagagcacatacctcgccta 159
Query: 420 tgcatgaccccaggtttgatccccaacaccttcaagaacaacccaaaacactactaggtg 479
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 158 tgcatgaccccaggtttgatccccaacacct-caaaaacaacccaaaacactactaggtg 100
Query: 480 actgactaatatcttttcaaacaaatggataaacgaatgttcttaaccattttgtaacta 539
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 99 actgactaatatcttttcaaataaatggataaacaaatgttcttaaccattttgtaacta 40
Query: 540 taatgagtttggtggtcagagaactagtagtctaaagaa 578
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 39 taatgagtttggtggttagagaactagtagtctaaagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1100
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1090
Effective search space: 748830
Effective search space used: 748830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
