BAC Information

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BAC

Clone NameMSMg01-050G06
Chromosome2 (Build37)
Map Location 50,572,226 - 50,618,658
singlet/doubletdoublet
Overlap genenone
Upstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050G06.T7 (MSMg01no050_g06.b1)MSMg01-050G06.TJ (MSMg01no050_g06.g1)
ACCAG279486AG279487
length1,1941,205
length of high quality
(start - end)		691 (83 - 773)775 (77 - 851)
definitionCHROMAT_FILE: MSMg01no050_g06.b1 PHD_FILE: MSMg01no050_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:38 2005CHROMAT_FILE: MSMg01no050_g06.g1 PHD_FILE: MSMg01no050_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,572,226 - 50,572,915)(50,618,221 - 50,618,658)
sequence
TTTTGNTNGCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAAGGGCATCAGCCTCTCTCTATGTGTTGTTTAGAGTTGTTA
GCCAGTAAAACTGAAACGATGAAGGAGATTATAAAATTGCATTTAAATTC
TTATTTATAATGTAAATATTACCAGTTCCCTTGCTCCCCTCTTTCTCTTC
CCCTTCTCTTTCATTCGCCTAAATGATTAGGTTCATGCATTTAGTGACTT
TATTCCTTTCTTTTTAATTTTTGGAGTAAGAGATTTTGGTTTCCTTACCA
CACAGCTTGCATTCTCCCAAAGCTGCCTAAATTTGTGTTGTTCGCAGCAG
GACAGCATGGTACAGAGGAACTACTTGGTACTCTGTCTGCCCCATGACTT
ATCCCCGGAAGGGAGTTTTAGTTTTATCTAGTTGGGTTTATGAAATTGTG
CATAAGGACACTGTGAGACCTTGGAGGTCATTCACTCAGAAGGATAAAGC
CATCAGAGATACTCACTGGGCACTGACTTTGTCGATAATATAAGGCACCA
GAGATTAATGGTGCTGGAATACACAGCTGCTGTTCAAAGAAGGGATTTTA
GCTCAGGCACTTTCAATAATCATCAGCAACTCCGGATAATTACCTAAGAG
GCGTTCTGAGGAGGTGATTCGTAGTGTACACATTTCTGTAAACTAGATTT
TACATATTGTATGGAATATCAACCCCAGTGTAAAAATAAATGTTTTCCAG
TATCAGACACTCCTCCCTCCAACCAGAGCAAAACCAAGAAAACTGAATAA
ATAAAAACATCAAACGCTTCTCTTTGGAAGTGGAGTTGACATCATTTAAT
GAGCTCAGCTTCCTGATGGCTGCCAGGAATGAATTGTCTCACTACTATAA
AACAAATACACGGAAAAGGTAAACCAAGACAGTTCTCTGAAGAAGACAGC
ATCAATGTGTATCAAAAGTCTCTGTAAAAAAATGGAAAGTTCCCTAGAAC
TTGTCTTGTGCACCCTCGGTCTGGTGGACAAATTTTTGCCATTTGTTGTA
CAACCCTAATCTTTAAACCCAACTTTAATTGTGTCAAATTTAATTCCCCC
CTTTTTGTCTGTTGTCTCTCCAATAATTTATAAAATATATAAGGAGCCCA
AATATAATTTCTTCTCAAGAGTCAACCTCTTATATTTTTATAGT

TTTTCTTTNTNNTACAAGTGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTACCCATATGGAAGTCTGG
GCATTGCTGTCTTGTATTGCATATCTAGGTATTATTCCATGTTCTAGGAC
TCTTATCTAATTAACACATGAGAAGGGAAAGCCTGGTAATGGATTATCTC
AACAAGTATCAAGATATTAAAAAGGATGTCCCAAATGGTGACAAAGAGAT
TAGAAACCCCAGTATCAAATACCAGTGAATACTTTATAATAAGCAAACTG
AGTCAGAATTCTATAAGACAACATACAGAGTCGAAGGAAATATCAGCAGA
TTATGTATCTGATAAAGGGGTAGTATCTATAATATAAAAAGAAATATTAA
AATAAGAACAGAAAAGTGAACTCACCCACTTAAAGAATCAATAGAGGAGC
AGTGTGAATAAACAATTATTCCAGAAAGATATAGAAATGGACCATAAGCG
CAAGAACCAATGTTTGGTATGCTCAGCCTCAGGAAACACAGATGCAGAGC
ACACTGAGATGCAACTTCACAACCCAGAGTGACCTGTAAACAGCAAATGC
TCATGAGATGTAGTGGAGTTGGGATATTCAGACACAAGTGGTGGTGTGTA
CAATGGCACATCTTCTAGAGAAAAGTTGTTATTGCTTTAGATACTCTACA
GTTTCATTACGTACCCAAGAGAAATGAAAATTTATATCCACATTCTGGAA
ATCCCCAGCAGCTTGATTCACAATAGTCGTCCCATGAAGGCAATCCAAGT
GCTGTTACATTGTAAATTTATGAATGGACGAAATGAAATGTGATATAGCT
TACCATAGAATATTATTTAGCCATAATAAGGAATGAAACATGGATGAACT
TCAAAATATTACACCCAGAAAAAGTTTAGACCTAAAAGGTCACATCTTAC
ATAATTAGTTCTGTGTGTTAAACTTCTGGAACAGATAATTCATTAGGGAT
AAAAAAAGTAAACTAAGGGTTGGCCAATGGCTGGTAAAAAAAGAATGAAC
GAAGGAAAAATTTGTTAAAAAATATTGAACCTTTAAGGAAAAAAAACCCT
TTTTTAAATACAGTTGTCAAGGTTTTCCCCAAATTTCCAACCCTTATGAA
AAAAGCCCCCGCGTCCGTGCCTTTTAAAAAAAAGGGCTCCCCTCCAAAAA
TAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_g06.b1 MSMg01no050_g06.b1 CHROMAT_FILE:
MSMg01no050_g06.b1 PHD_FILE: MSMg01no050_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:38 2005
         (691 letters)



>mm_chr2_50572026_50573116
          Length = 1091

 Score = 1295 bits (670), Expect = 0.0
 Identities = 685/690 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgtttagagttgttagccagtaaaactgaaacgatgaaggagattataaaattgcat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tgttgtttagagttgttagccagtaaaactgaaatgatgaaggagattataaaattgcat 260

                                                                       
Query: 61  ttaaattcttatttataatgtaaatattaccagttcccttgctcccctctttctcttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaattcttatttataatgtaaatattaccagttcccttgctcccctctttctcttccc 320

                                                                       
Query: 121 cttctctttcattcgcctaaatgattaggttcatgcatttagtgactttattcctttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctctttcattcgcctaaatgattaggttcatgcatttagtgactttattcctttctt 380

                                                                       
Query: 181 tttaatttttggagtaagagattttggtttccttaccacacagcttgcattctcccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatttttggagtaagagattttggtttccttaccacacagcttgcattctcccaaag 440

                                                                       
Query: 241 ctgcctaaatttgtgttgttcgcagcaggacagcatggtacagaggaactacttggtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctaaatttgtgttgttcgcagcaggacagcatggtacagaggaactacttggtact 500

                                                                       
Query: 301 ctgtctgccccatgacttatccccggaagggagttttagttttatctagttgggtttatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtctgccccatgacttatccccggaagggagttttagttttatctagttgggtttatg 560

                                                                       
Query: 361 aaattgtgcataaggacactgtgagaccttggaggtcattcactcagaaggataaagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaattgtgcataaggacactgtgagaccttggaggtcattcactcagaaggataaagcca 620

                                                                       
Query: 421 tcagagatactcactgggcactgactttgtcgataatataaggcaccagagattaatggt 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tcagagatactcactgggcactgactttgttgataatataaggcaccagagattaatggt 680

                                                                       
Query: 481 gctggaatacacagctgctgttcaaagaagggattttagctcaggcactttcaataatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctggaatacacagctgctgttcaaagaagggattttagctcaggcactttcaataatca 740

                                                                       
Query: 541 tcagcaactccggataattacctaagaggcgttctgaggaggtgattcgtagtgtacaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagcaactccggataattacctaagaggcgttctgaggaggtgattcgtagtgtacaca 800

                                                                       
Query: 601 tttctgtaaactagattttacatattgtatggaatatcaaccccagtgtaaaaataaatg 660
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 801 tttctgtaaaatagattttacatattgtatggaatatcaacccaagtgtaaaaataaatg 860

                                         
Query: 661 ttttccagtatcagacactcctccctccaa 690
           ||||||||||||||| ||||||||||||||
Sbjct: 861 ttttccagtatcagaaactcctccctccaa 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no050_g06.g1 MSMg01no050_g06.g1 CHROMAT_FILE:
MSMg01no050_g06.g1 PHD_FILE: MSMg01no050_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:38 2005
         (775 letters)



>mm_chr2_50618221_50619395
          Length = 1175

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctttacccatatggaagtctgggcattgctgtcttgtattgcatatctaggtattattc 61
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 438 tctttacccatatggaagtctgggcattgctgtcttgtattgtatatctaggtattattc 379

                                                                       
Query: 62  catgttctaggactcttatctaattaacacatgagaagggaaagcctggtaatggattat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catgttctaggactcttatctaattaacacatgagaagggaaagcctggtaatggattat 319

                                                                       
Query: 122 ctcaacaagtatcaagatattaaaaaggatgtcccaaatggtgacaaagagattagaaac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcaacaagtatcaagatattaaaaaggatgtcccaaatggtgacaaagagattagaaac 259

                                                                       
Query: 182 cccagtatcaaataccagtgaatactttataataagcaaactgagtcagaattctataag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cccagtatcaaataccagtgaatactttataataagcaaactgagtcagaattctataag 199

                                                                       
Query: 242 acaacatacagagtcgaaggaaatatcagcagattatgtatctgataaaggggtagtatc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acaacatacagagtcgaaggaaatatcagcagattatgtatctgataaaggggtagtatc 139

                                                                       
Query: 302 tataatataaaaagaaatattaaaataagaacagaaaagtgaactcacccacttaaagaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tataatataaaaagaaatattaaaataagaacagaaaagtgaactcacccacttaaagaa 79

                                                                       
Query: 362 tcaatagaggagcagtgtgaataaacaattattccagaaagatatagaaatggaccataa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tcaatagaggagcagtgtgaataaacaattattccagaaagatatagaaatggaccataa 19

                             
Query: 422 gcgcaagaaccaatgttt 439
           ||||||||||||||||||
Sbjct: 18  gcgcaagaaccaatgttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space:   891225
Effective search space used:   891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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