BAC Information

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BAC

Clone NameMSMg01-050M06
Chromosome2 (Build37)
Map Location 84,507,198 - 84,507,974
singlet/doubletsinglet
Overlap genenone
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050M06.T7 (MSMg01no050_m06.b1)MSMg01-050M06.TJ (MSMg01no050_m06.g1)
ACCAG279741AG279742
length1,1951,251
length of high quality
(start - end)
519 (70 - 588)702 (79 - 780)
definitionCHROMAT_FILE: MSMg01no050_m06.b1 PHD_FILE: MSMg01no050_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:31 2005CHROMAT_FILE: MSMg01no050_m06.g1 PHD_FILE: MSMg01no050_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTATGCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCTTGA
TCTTACGCACACCCTTTGCTGTTCTGTTTAGGAATTTTTCCCCCTGTGCC
CACATCTTCGAGGCTTTCCCCCACTTTCTCCTCTATTAATTTTCAGTGTC
TCTGACTTTATTTGGAGGTGTTTGATCAACTTATACTTGAACTTTGTATA
AGGAGATAGGAATGGATCAATTCGCAGTCTTCTACATGATAGCCATCAGT
CGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCAACTGTATGTTG
AAAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTATGGATTCATTTT
TGGGTCTTCAATTCTATTCCACTGGTCTACTTTTCTGTCCCTATACCAGT
ACCATGCAGTTCTTAATCACAATTGCTCTGTAGTACAGCTTAACGTCAGG
CATTGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAACAGTTTTTTCTA
TCCTAGGTTCTTTATTATCCTAGAATAATATGCAAATTGCCCTTTCTATC
TCAGTGACGAATTGAGTTGGAATTTTGATGGGGATTGCCTCAACCCTCTA
GATTGCTTTTGGCAGGATACCCATTTTGACTATATTAATCCTGCCAATCC
ATGAGCATGGTAGATCTTTCCACCTCCTGAGATCTTCAATTTCTTTTTTC
AGAGACTTCAAGTTCTTATCATACTGACATTTCACTCCCCTAGTTAGAGT
CCCCCCCAGATATACTATATCATTTGTGACTATTGTAAAGGGAGCTGTTT
TCCCTAATTTTCTTTCTCAAATATTTATCCCTTTGCTTTAAATAAAAGTC
CATTTCATTTGTTTGAACCTAATTTTATCTCCCACCTATTGCCTCTGATA
TTGTTTTATCACTTTTAACATGTTCTTTGGCTGCATCTTTTGTCTCTCTT
TTTTTCTACTCTTATTTTATTTCTTTCCTCCTGTCATCTTACTTGCATTT
TTTCCTTCCTTCTCTTTCCCTCATTAATCACCCCCTTAGATCTTCTCCTT
TCTTTATTCCCATAATTCCTCTGTTTTCTAGTTTCTTTTCTTATTCTTTC
TTTTTTAACCTTTCTCTATTCTCCATATCTTTCTCTTTTTCCTCCTAATC
TCATCTTTTCACATCCATTATTTTCTCTTCTTTATTTTCTTCATT
NNNCCGACACTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCCTTAACGCCTACCTCCAGCTCTGTAGAGGA
GGGGCAGGTCCGAAGAGTAAAACATAGGAAGATTGTCAATGGTACCTGCT
GGGAGGTGGTATAGGAGCCTCCCCTCAGAAACACTCAAGATAGCCCCCAG
ATCCTAGAACCCTCAGATGTAGAAGAGCCTTCTGGAACTCTGCTGTCCTC
AGTTAATGAGCAGGAAATACCTGCTAGAATACAACTGCGTCAGGACTCCC
CAGAGAGCCCTAGGCTTCAAGACATTCTGCTCTCTGCTAGCCACTCCCCA
GACCACCCTGTGGTGAAGTCAGAGTTTGGGTCCAGTCCAAACCTTGTGAG
GCTGATTTATATTGAATCACAAGTGCCGCAGCTACCAGTGAACTGGAAGA
GATTTCGGATTTTATGCTATGTGACTCAGATGTTGAGCCACCAGTAGGTT
CTTTGGAGCGTCCTGGGGCTGAAGGCTGCAGAACCCCCAACTTATCACCT
GGCAGAAACAGGAAAGAATTGGATTGAAGGGAAAGAATGGTGTTTGCCAG
ACATGGAACTCTGGCCCAGAAACCTCACAGGATTGGAAAAGGAACCAGTT
AGCGACCACAAAGAGCCAGTTGAGCCCTTTAGTCCCCTTGTCATGGGCTC
TGAGGACACAGAATCATTTGAGCCCTTTAGCCCCCTTGCCATGCTCTCTG
AGGCGAGTAGAGAGGCACTTTCACTAAGAGGCTCTTAGACTCCCGACCTT
GAAATTACCAGCTCCCAGCCCCTGGATGGTTCAGGGAGAAAAACTTTCTC
CACTTGAACTCCTCTGACCCTTTCGCAAAGATCTTATAATCCCTCTCTCT
CCTCCATGCCTCAAACTGGGCTAGAAATAAGGTCTGGTAAGGGTCCCCTC
GGTTATGGAATGACGTAATTGGTGCTCTCGATTCCCCAAGGGCCTTTCCA
AATAATGTTCTTTGCCTAACCCTTGAAACAACCTTGTACCCTCACTTCCC
TTGGCCCTTTTTTGTAAACAATTAATAATAATTTGGATGCTCGTTAAAAC
ACGGGACATCGCTGGTTACACATATACCGTGTGTCGCCTCCCACTAAGAG
TGGTCTCCCCTTTGTGTTTGGTCCATCTTACACCCTTTTCCCTCTCTATC
CTNTAGAAATAATGGTAGATGTGAATTATTTTAATTTATAATTTTTATTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_m06.g1 MSMg01no050_m06.g1 CHROMAT_FILE:
MSMg01no050_m06.g1 PHD_FILE: MSMg01no050_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:31 2005
         (702 letters)



>mm_chr2_84507074_84508174
          Length = 1101

 Score =  946 bits (489), Expect = 0.0
 Identities = 669/781 (85%), Gaps = 83/781 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctccagctctgtagaggaggggcaggtccgaagagtaaaacataggaagattgtca 60
           |||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||
Sbjct: 125 ctacctccagctctgtagaggaggggcaggttggaagagtaaaacttaggaagattgtca 184

                                                                       
Query: 61  atggtacctgctgggaggtggtataggagcctcccctcagaaacactcaagatagccccc 120
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 185 atggcacctgctgggaggtggtacaggagcctcccctcagaaacactcaagatagccccc 244

                                                                       
Query: 121 agatcctagaaccctcagatgtagaagagccttctggaactctgctgtcctcagttaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agatcctagaaccctcagatgtagaagagccttctggaactctgctgtcctcagttaatg 304

                                                                       
Query: 181 agcaggaaatacctgctagaatacaactgcgtcaggactccccagagagccctaggcttc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 agcaggaaatacctgctagaatacaactgtgtcaggactccccagagagccctaggcttc 364

                                                                       
Query: 241 aagacattctgctctctgctagccactccccagaccaccctgtggtgaagtcagagtttg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 aagacattctgctctctgctagccactccccagaccaccctatggtgaagtcagagtttg 424

                                                                       
Query: 301 ggtccagtccaa------------------------------------------------ 312
           |||| |||||||                                                
Sbjct: 425 ggtctagtccaatgctgacagggaaggaatctgacttgaatattgactgcagagagccct 484

                                                                       
Query: 313 ----------------------------accttgtgaggctgattt--a-tattgaatca 341
                                       |||||||||||||||     | ||| ||||||
Sbjct: 485 acacattcgacacaaccttgcttggccaaccttgtgaggctga---gcagtatcgaatca 541

                                                                       
Query: 342 caagtgccgcagctaccagtgaactggaagagatttcggattttatgctatgtgactcag 401
           ||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||
Sbjct: 542 caagtgctgcagctaccagtgaactggaagagatttttgattttatgctatgtggctcag 601

                                                                       
Query: 402 atgttgagccaccagtaggttctttggagcgtcctggggctgaaggctgcagaaccccca 461
           ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 602 atgttgagccaccagtaggatctttggagagtcctggggctgaaggctgcagaacccc-a 660

                                                                       
Query: 462 acttatcacctggcagaaacaggaaagaattggattgaagggaaagaatggtgtttgcca 521
           | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 661 agttatcacctgtcagaaacaggaaagaattggattgaaggggaagaatggtgtttgcca 720

                                                                       
Query: 522 gacatggaactctggcccagaaacctcacaggattggaaaaggaaccagttagcgaccac 581
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||
Sbjct: 721 gacatggaactctggcccagagacctcacaggattggaaaaggaaccagttagtgagaac 780

                                                                       
Query: 582 aaagagccagttgagccctttagtccccttgtcatgggctctgaggacacagaatcattt 641
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 781 aaagagccagttgagccctttagtccccttgtcatgcgctctgagaacacagaatcattt 840

                                                                       
Query: 642 gagccctttagcccccttgccatgctctctgaggcgagtagagaggcactttcactaaga 701
           |||||| |||||||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 841 gagccccttagcccccttgtcatgccctctgaggtgagtagagaggaactttcactaaga 900

            
Query: 702 g 702
           |
Sbjct: 901 g 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1101
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1091
Effective search space:   754972
Effective search space used:   754972
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)