Query= MSMg01no050_o24.b1 MSMg01no050_o24.b1 CHROMAT_FILE:
MSMg01no050_o24.b1 PHD_FILE: MSMg01no050_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:54 2005
(554 letters)
>mm_chr2_34853406_34854359
Length = 954
Score = 810 bits (419), Expect = 0.0
Identities = 480/507 (94%), Gaps = 16/507 (3%)
Strand = Plus / Minus
Query: 50 acaagaagcaatgtgttaggtagttgaatactatacatgggcactctagtcaaaatgcag 109
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 954 acaagaagcaatgtgttaggtagttgaataatagacatgggtactctagtcaaaatgcag 895
Query: 110 ttaaatctggtctctaatgtgtgttactaagcacagtgactctgagaggtagcgggacag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ttaaatctggtctctaatgtgtgttactaagcacagtgactctgagaggtagcgggacag 835
Query: 170 agatggggtacagtgcacagcatttcctagactcttttaaagcctttctcatttggcatc 229
|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 834 agatggagtacagtgcacagcatttcctagactcttttaaagcttttctcattcggcatc 775
Query: 230 tggaa--acactcattccctgagtaaacgctactgtatcctgtcagggagaataggaaag 287
||||| | | || ||| | | || ||||||||||||||||| ||||||||
Sbjct: 774 tggaatga---tgat---ctg-g--atcg-----gtatcctgtcagggagactaggaaag 729
Query: 288 gtgatctatttccctgggtttactaaaacttgaaggaaaagattggcaaacttgaatgtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgatctatttccctgggtttactaaaacttgaaggaaaagattggcaaacttgaatgtg 669
Query: 348 caccaaacctactttgcaccattgtgccaggcaaagagaactgaacaaggcgagtgtgga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 caccaaacctactttgcaccattgtgccaggcaaagagaactgaacaaggcgagtgtgga 609
Query: 408 gggagtgggagctgagtcttcagccttgatcaaagtaatggctctgaactacgacaggtg 467
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagtgggggctgagtcttcagccttgatcaaagtaatggctctgaactacgacaggtg 549
Query: 468 gatgacagggtgtctctagggaggacggttgtttagctgaatctgtgtcttcacttttct 527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gatgacagagtgtctctagggaggacggttgtttagctgaatctgtgtcttcacttttct 489
Query: 528 ctcggggagtgggaaaaagaacagcaa 554
|||||||||||||||||||||||||||
Sbjct: 488 ctcggggagtgggaaaaagaacagcaa 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_o24.g1 MSMg01no050_o24.g1 CHROMAT_FILE:
MSMg01no050_o24.g1 PHD_FILE: MSMg01no050_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:54 2005
(537 letters)
>mm_chr2_34639811_34640748
Length = 938
Score = 986 bits (510), Expect = 0.0
Identities = 531/538 (98%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 1 gcacatcgtaaagagttctgaatatataaggcccctggccctcttacaggcttacctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacatcgtaaagagttctgaatatataaggcccctggccctcttacaggcttacctata 260
Query: 61 tcaatgcaatggagatcatcaaagaacttgtcccctgccaatcctccgtggatgaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatgcaatggagatcatcaaagaacttgtcccctgccaatcctccgtggatgaagagt 320
Query: 121 tttgtgcccgctgccaccatcacatggccatgccgaggagacggaggacttccatgtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgcccgctgccaccatcacatggccatgccgaggagacggaggacttccatgtgtc 380
Query: 181 tccggctgagaccatgtcagagtgtctacaaaggtaaaggcattaacactaggtaacctg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccggttgagaccatgtcagagtgtctacaaaggtaaaggcattaacactaggtaacctg 440
Query: 241 tctctgcaagcacctcccagggcagggcgctccaagaaggaagtcacctcagagtccttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgcaagcacctcccagggcagggcgctccaagaaggaagtcacctcagagtccttc 500
Query: 301 tccccagcttaccagcaggagacctcaatcccactacgtaacctctacttggatacttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tccccagcttaccagcaggagacctcaatcccactacgtaacctctacttggatactcgc 560
Query: 361 agggctgtaaactgcaaagccaataaccccacatgctggcttactgtctggctagtagga 420
|||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 561 agggctgtaagctgcaaagccaataaccccgcatgctggcttacagtctggctagtagga 620
Query: 421 agccatctcttgctttggattgagaaaagcttcgcataagaactacctcaaagttaaaat 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 agccatctcttgctttggattgagaaaagcttcgaataagaactacctcaaagttaaaat 680
Query: 481 aagtgcgcatgcttcttctgtgagaaaccttcagagctcttcttttttttt-cttttg 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 aagtgcgcatgcttcttctgtgagaaaccttcagagctcttcttttttttttcttttg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
