BAC Information

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BAC

Clone NameMSMg01-051J16
Chromosome2 (Build37)
Map Location 139,982,972 - 139,983,092
singlet/doubletsinglet
Overlap geneEsf1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365
Downstream gene2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051J16.T7 (MSMg01no051_j16.b1)MSMg01-051J16.TJ (MSMg01no051_j16.g1)
ACCAG280316AG280317
length1,286779
length of high quality
(start - end)
---122 (135 - 256)
definitionCHROMAT_FILE: MSMg01no051_j16.b1 PHD_FILE: MSMg01no051_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:32 2005CHROMAT_FILE: MSMg01no051_j16.g1 PHD_FILE: MSMg01no051_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTTCTTCAATCATGCTTTCT
TCTTCTCTTTCGTAATTTGCTCTCTCCATCTTCTTTCCCTTGTTTATCCT
TTTATTTTTTCCCTATTTCGTTATTTTTTATACTTCATTTTTTTCTTCGA
ATTTTTTTTTTGTATTTTTTTTTCCTTATTTTTTATCTCCTCTTTTTTCT
TTTTTCTACCTCCTCTTTTTTTATCTTTTTTTTCTTTTTCTTTTCCTATT
CTCTTTTTTTTTCTTTTTTTGCTTTTCTCTTTCTTCTTTCTCTCTATCTT
TCTTTTTCATATTCTCTCTTCTTTTTTTCCTTTTTTTTTTCTCTTTTTTT
CTCTCTTTTCTTCTTTCTCTTTTCCCTATCTTTCTTTTTCTTTTCTTTTC
TTTCTCTTTTCTTTTTCTTTCTTCTTTTTTATTCTTTCTCTTTCATTTCT
TTTTTTGTTTTCTTCTTTTTTCTCTTTCTTTCTTTCTCTTCTTTCTTTCT
TATATTTCTTCTTTTTTCTGCATTTTTTCTCTTTCCTTTTTTCTTTTTTT
TCTCTTCTTCTTCTTTTGTCTCTCTCTCTCTCTATTACTTCATTCCTTTC
GCTACTTATTTTTTTTTTCCCCTTTTTCTTTTCTTTTATTTTATTCTATT
TCTTTATTCTCCCCCTTTGTTTTCTTNCTTTTTCTTATTTTCCTTCTCAC
TATCTTCTCTTTTACTTATTTTTCTTTTTCTTTCTT
TTTTTTTTGTTNNNNNNTCNNGNTTTTTGTGNGCGCCNNNNCTTCNNTCC
AAAAAAACCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAAATTTAATGAA
ATTTCAGATTTATACTTTTTAAATTTCACACATGTTGTGCCAAGGTTGTT
TCTAGCCATTGCATTTGTATAGAAACTTATATAGTATATAAACTATTACT
AATTACAAATTTTAAACCCTGGTAATCACTTCTTTTTATGTTTAAGTAAA
TTTTTCTTTTTCTTTTTTTAGACTTATACCATATGATATTACCTTTGATG
ATGAGCCCAAGGATGTGGTCTTATATTTTTTTTTTAACGGTATATAATCC
TAAGTATTTCTCATCAGCTGTAACGCCAATATCATCGCTATTTTCTTTAA
TTTTCATATTGTTTTTATGTTTTTTCCCCCCCCGGCACTTGTTTATTAAT
TTTCATTACTTGCTTACATTGATTACCTTTAACCTAATTTCTCTTTCATT
TTCTGCGCTTTATATTTTTTTACTCTTGAATCTTTATCCCTTATTTATGA
TGTTCCCGTACTTATTTTTTTGCACACCTCAGAACTTTTCGCTTCTCATC
CTCGTATATCTTTTATATTTCATTTCTCTTTTTCTTTTTTTTTTATCATC
ACTATTTCCTACCTTCACTTTATCCACCCCTTGCGTTAACTTATTTCCTT
TAATTATCCTTCTTCTTTTTTTTCTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_j16.g1 MSMg01no051_j16.g1 CHROMAT_FILE:
MSMg01no051_j16.g1 PHD_FILE: MSMg01no051_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:32 2005
         (122 letters)



>mm_chr2_139982772_139983293
          Length = 522

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaaatttaatgaaatttcagatttatactttttaaatttcacacatgttgtgccaag 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 321 tctcaaatttaatgaaatttcagatttatactttttaaatttcagagatgttgtgccaag 262

                                                                       
Query: 61  gttgtttctagccattgcatttgtatagaaacttatatagtatataaactattactaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtttctagccattgcatttgtatagaaacttatatagtatataaactattactaatt 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)