BAC Information

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BAC

Clone NameMSMg01-052I24
Chromosome2 (Build37)
Map Location 86,621,803 - 86,622,302
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302
Downstream geneOlfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052I24.T7 (MSMg01no052_i24.b1)MSMg01-052I24.TJ (MSMg01no052_i24.g1)
ACCAG281017AG281018
length730732
length of high quality
(start - end)		541 (46 - 586)570 (64 - 633)
definitionCHROMAT_FILE: MSMg01no052_i24.b1 PHD_FILE: MSMg01no052_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:13 2005CHROMAT_FILE: MSMg01no052_i24.g1 PHD_FILE: MSMg01no052_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCGGCGCTATACGACTCCTATAGGTCCAGAATACGCGGAATTCAGTAGA
TAATTCCCGTTTCACACACTGGGGCTTGTTCTACATTCTAGAGGAAAATA
AAATGGGTGTATATGCAAACCTGGTTTAAAGGATTTTTATGGCATTTAAA
TTTTAAGGAAATGTGTTGAATATTTTTTGCCATGTTCTTTGTAGAGCATC
TTTTACATCTTTGTTCCTCAGACTGTAAATCAGGGGATTCAATAAGGGGA
TGATTAGAGTATAAAATATAGATGATATTTTATCAGTATCAATTGAATGG
CTAGATACAGGTTTTACATACATAAATATCAGTGTCCCATAGAATATTGT
AACCACTGTCAGGTGGGACCCACAGGTAGAGAAAGCTTTGCGTCTGCCCT
CAGCAGAGTTCATCCTGAGAACAGCTATGAGAATGAGCAGGTAGGACATA
AGCACAACGACAAGGGAAGAAATCAAATCAAAACCTGCAAAGATCATAAC
TATAAGTTCAACTTTTTGTGTATTTGAGCAAAGTAATGATATTAAGGGGA
TACAATCACAAAAGAAATGGTTGATGACATTGTAGCCACAGAAGGATAAA
GAGAATATATTTATGGTGACTACAAGGGACATAAATGTATAGTACAGATA
GGTCATTGTGACTAGAACCCAACATACTTTATGTGACTTGATGACAGTGT
ATAGCAGATGCTTACCTATGGTCACATAGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGCATCTTTAAATATAATTTACTTATTTGGATTTAAA
GTATCCTTCATCAAGATGGTATGAGATTTAAATGCATGCACATGAGAATG
ACAATAGAAGAGAGAGGATATGGGAATTAGGATAAGAAATGATAACAAGA
GAGATGAAAGAGACGATATACTGTTAATGTTGCCCAGTGAAATATAACAA
TATTAGTTCTGTGGCAGAGTTAAATTTCAATTACTTGAGTTCATAGAGTA
GGCAATTTTAGTCTGTCTCTGTCTCTGTCTCTCTCTTTCTCTTTCTCCCC
TTATTTCTTTCTTTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTCTT
ACTGTTTGGTTGTTTCTGAATTTATATTCTATTCCCAACTATATCTATCT
AAAGTCAAATATCTGTTGAAAGCATAAAAATCTATTCCTTTTCCAATTGT
TCCATGTTGTCTCCTAAAATGTCACTATGTACTAGTCAATAAAGTAGTAT
GTTTAATATTAAATTAAATTAAAATCTGGTTTTGGTTTGATCAATCCCCA
AACAAAGCATGTCAAATTTAATAATTTGAAGAAAATTAGTTTTTTACTTA
AACATAATAATTATTCCTAGTTGATCCATGTTTTGACTGTATAGGAAATA
TGGCATGTATGTGTGTGCGTGTGTGTGCGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_i24.g1 MSMg01no052_i24.g1 CHROMAT_FILE:
MSMg01no052_i24.g1 PHD_FILE: MSMg01no052_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:13 2005
         (570 letters)



>mm_chr2_86621333_86622302
          Length = 970

 Score =  891 bits (461), Expect = 0.0
 Identities = 489/505 (96%), Gaps = 14/505 (2%)
 Strand = Plus / Minus

                                                                       
Query: 75  gcacatgagaatgacaatagaagagagaggatatgggaattaggataagaaatgataaca 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gcacatgagaatgacaatagaagagagaggatatgggaattaggataagaaatgataaca 911

                                                                       
Query: 135 agagagatgaaagagacgatatactgttaatgttgcccagtgaaatataacaatattagt 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 agagagatgaaagagacgatatactgttaatgttgcccagtgaaatataacaatattagt 851

                                                                       
Query: 195 tctg-tggcagagttaaatttcaattacttgagttcatagagtaggcaattttagtctgt 253
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tctgct-gcagagttaaatttcaattacttgagttcatagagtaggcaattttagtctgt 792

                                                                       
Query: 254 ctctgtctctg--------tctctctctttctctttctccccttatttctttctttgttt 305
           |||||||||||        |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 791 ctctgtctctgtctctctctctctctctttctctttctccccttatttctttctttgtt- 733

                                                                       
Query: 306 ttgtttgtttgtttgtttgtttgtttgttcttactgtttggttgtttctgaatttatatt 365
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ---tttgtttgtttgtttgtttgtttgttcttactgtttggttgtttctgaatttatatt 676

                                                                       
Query: 366 ctattcccaactatatctatctaaagtcaaatatctgttgaaagcataaaaatctattcc 425
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctattcccaaccatatctatctaaagtcaaatatctgttgaaagcataaaaatctattcc 616

                                                                       
Query: 426 ttttccaattgttccatgttgtctcctaaaatgtcactatgtactagtcaataaagtagt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttccaattgttccatgttgtctcctaaaatgtcactatgtactagtcaataaagtagt 556

                                                                       
Query: 486 atgtttaatattaaattaaattaaaatctggttttggtttgatcaatccccaaacaaagc 545
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 555 atgtttaatattaaattaaattaaaatctggttttggtttgatcaatcccaaaacaaagc 496

                                    
Query: 546 atgtcaaatttaataatttgaagaa 570
           |||||||||||||||||||||||||
Sbjct: 495 atgtcaaatttaataatttgaagaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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