BAC Information

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BAC

Clone NameMSMg01-053A11
Chromosome2 (Build37)
Map Location 146,638,247 - 146,638,470
singlet/doubletsinglet
Overlap genenone
Upstream geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
Downstream geneGm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A11.T7 (MSMg01no053_a11.b1)MSMg01-053A11.TJ (MSMg01no053_a11.g1)
ACCAG281361AG281362
length692700
length of high quality
(start - end)
311 (47 - 357)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no053_a11.b1 PHD_FILE: MSMg01no053_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:49 2005CHROMAT_FILE: MSMg01no053_a11.g1 PHD_FILE: MSMg01no053_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCG
GAATTCTTTGTATTCCGAGATTATTACTTGGTCATGCACGTGCTAAATCT
TGTTTAAGAACGATTTCCTAGCTGGGTGTGGTGACATGTGCCTTTAGTCC
CAGCACTCCAGAGGCAGAGGTAGGTGGATCTACGTGAATTTGAGGCTAGC
CTGCTCTACAAAGTGAGTTCCGGGACTACACAGAGAAACTCTGTCTCAAA
AAAAAAGGATTTCCATACAAATTAAAGACACGAGCCTCACCACCAAGCTA
TGATTAAGAAAAGGATGCTCTCTTTCACCCCCTTCTGGTGGCATATGCTA
ATTGCAGGTTAACATCCTACTCAGTGGACAATCTAGAACAAAAAAGGTTT
TCAAATTAGGCTGAAAAGAAAATCATCTGGTTAATTTTGAAAATCCCCCT
GTACAGATCACAACCCTGACCAATAAATTCTGATTATCTGGGATGGCGCT
AGACTTGAAACGCCTGTCTCACATTGCTGACTTTATTTACTATCCCCTGT
GATGCGTCTCTAAGTACCACTTCTTTCTACTTTGTATAACATATACTTTC
TTAACCTTTTTAAACGACACTGTGCCCCTTTTTTGCGTCTTTGTTTCGTT
CCATCACCCTTTATTTACCCATTCCCCGTCGTGTCTTCCTTG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTAAATGACCATGCCAGTTAG
GTAGCAAGTGATCTTCAAAGCCAGTGTCCTTCCAATAAATGTTTGCCCTG
ATTTCATTATTCCTAAAGGCTCATGGATGCCAGAAAGAACAAAGAGATGA
GGGGGGAAAGTATCTCTTTGATTGCCCCCCTTGGTGTGTATTTTAGAATG
CAGACATGATATTGGACCAGTTCTCTGGTCATTTAGGGACTTCCTGGCAT
TCTTTATTGCTAGTGGATAAGAATGTGAACTTTCACATGTGCTGGTGGGT
GGGGTAAAGACAAGCTGCCTTATAGAGTCAGATGTCCCCATGTCCTTTCT
CCTGTTTGTTCTTTACACCATTGGGTGATTAAGCTGTTTGAGAAGAGGTT
CACAGTTAGGGATTTAATCTCCAGAACCACTCACTTATACCTGGATCTAG
ACGATAGACAGATCGACTATCCATATACCAACCCCGATCTTGCCCATATG
ACGTGTATTAGAGCAGTACTTTTTTTTGACCCCACTATCTACCATTGTTT
CGACCTTTGAACCCTCAATCTTTTGGCGTTTGCGAAGTTCATTGGTTTCC
ATTTCCCACCGGGTCTTTTTAGCCTTTCAAATCTTATTTCTGCTCCCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a11.g1 MSMg01no053_a11.g1 CHROMAT_FILE:
MSMg01no053_a11.g1 PHD_FILE: MSMg01no053_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:49 2005
         (242 letters)



>mm_chr2_146638047_146638688
          Length = 642

 Score =  426 bits (220), Expect = e-124
 Identities = 223/224 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaaatgaccatgccagttaggtagcaagtgatcttcaaagccagtgtccttccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 catgtaaatgaccatgccagttaggtagcaagtgatcttcaaagccagtgtccttccaat 365

                                                                       
Query: 61  aaatgtttgccctgatttcattattcctaaaggctcatggatgccagaaagaacaaagag 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 364 aaatgtttgccctgatttcattattcctaaaggctcacggatgccagaaagaacaaagag 305

                                                                       
Query: 121 atgaggggggaaagtatctctttgattgccccccttggtgtgtattttagaatgcagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgaggggggaaagtatctctttgattgccccccttggtgtgtattttagaatgcagaca 245

                                                       
Query: 181 tgatattggaccagttctctggtcatttagggacttcctggcat 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgatattggaccagttctctggtcatttagggacttcctggcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)