BAC Information

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BAC

Clone NameMSMg01-053F02
Chromosome2 (Build37)
Map Location 154,732,372 - 154,732,740
singlet/doubletsinglet
Overlap genenone
Upstream geneBpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F02.T7 (MSMg01no053_f02.b1)MSMg01-053F02.TJ (MSMg01no053_f02.g1)
ACCAG281564AG281565
length710709
length of high quality
(start - end)		444 (46 - 489)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no053_f02.b1 PHD_FILE: MSMg01no053_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005CHROMAT_FILE: MSMg01no053_f02.g1 PHD_FILE: MSMg01no053_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGATCCGCG
GAATTCACCCATATACCGGCTTCAGCCTGTTTTCCCCCTAACAGCCCTCA
TCCATATCCCTCAGGAGAGAGGCTGCCTGTCACTGTGTGTGCTGATAAGC
ACAATTTTGTCTATTGAAAGTCAGACTCCTGTCTCTTTGCTGCATTCTGT
GTCTTTACACTGCCTCAGAAGTCTAACAACGTTATCATCTGTAACTCCAG
CTCCAGGGGATCCCACACCTCTGACCTCTATGGGCACCTATGCTGAGGGT
CTCTGTGACCTCTATGGCCAGCAGAGTAACAATCTGCAGGAGGCAAGAAG
ATGGTTCAGTTCAACTTTACTAAGCAGTCAGTGTTCATTCAAACTTCAGG
AGCCTGGCCTTCCTACCAAATATAGTTTATTTTGGGTATATTTAAGCACA
AAACAATTTGGTGCTTTCCTAGTGGAAATTAACTCACTGTGTGCGGGGCC
ACCCCTAGGCTGGTGGACCTGGTTTCTACAAGAAAGCAGACTGATCAAGC
CATGCTAAATAAGCCAGTAAGAGTATCCTTCCCATGATCTCTGCATCAGC
TTTTTCCTGTTTGAACTCCTGTCCTACCTTCCCGTGATGGTGAACAGGTA
TACGAAAAATTATCCAAATAAACCCTTTGCTTCTCAAGCTGGCCTTCCTG
ACGGTGGTTT

TACGATGAAGTGGGAGGCTGGCGGCGCCTGTTTCAAACAGGGGGTGAANT
ATAGAAGTTTTCGAAAAAGGGGTCAAAAAAATTGTATGAAGTTCTCAAGG
AATTAATTAATGTATTTCTCAATATACAATGTCTGTACTGAACATATACA
GACCACTTATATTTCAATCTCCTAAATAGCAACTCTTTTTATAGCACTTA
CATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGG
ATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAACATTCA
CCTACAACACCAGTGTTTATTATTTTGGGAGGGGCAGAGACAGGAAGATG
ATTGTGGTTTCCTGCACCCCCCCCTCACTACCAGCTCAGCAAGAAAACCA
GTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTATACCCT
TCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAA
ATAAGTTTAAAATATGCAAGAGGTTATTTTGCATAGCTTATGCTCAAAAG
CATTGTTGTCTCAGACTAGAAACCTGAGGACTTTATATCTTCATAGTGCC
CCGGAGCAAACTCCCCAGATATAGATGAGGGCTATATCTTCTTACTGGGC
CCAGGAAACTTCTTTCTAGCGCGTGTGTCATCGACTCCAAATAGCTTTTC
TCCTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f02.b1 MSMg01no053_f02.b1 CHROMAT_FILE:
MSMg01no053_f02.b1 PHD_FILE: MSMg01no053_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:12 2005
         (444 letters)



>mm_chr2_154732372_154733215
          Length = 844

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacccatataccggcttcagcctgttttccccctaacagccctcatccatatccc 65
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattcacccatagaaaggcttcagcctgttttccccctaacagccctcatccatatccc 310

                                                                       
Query: 66  tcaggagagaggctgcctgtcactgtgtgtgctgataagcacaattttgtctattgaaag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcaggagagaggctgcctgtcactgtgtgtgctgataagcacaattttgtctattgaaag 250

                                                                       
Query: 126 tcagactcctgtctctttgctgcattctgtgtctttacactgcctcagaagtctaacaac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcagactcctgtctctttgctgcattctgtgtctttacactgcctcagaagtctaacaac 190

                                                                       
Query: 186 gttatcatctgtaactccagctccaggggatcccacacctctgacctctatgggcaccta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gttatcatctgtaactccagctccaggggatcccacacctctgacctctatgggcaccta 130

                                                                       
Query: 246 tgctgagggtctctgtgacctctatggccagcagagtaacaatctgcaggaggcaagaag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgctgagggtctctgtgacctctatggccagcagagtaacaatctgcaggaggcaagaag 70

                                                                       
Query: 306 atggttcagttcaactttactaagcagtcagtgttcattcaaacttcaggagcctggcct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  atggttcagttcaactttactaagcagtcagtgttcattcaaacttcaggagcctggcct 10

                    
Query: 366 tcctaccaa 374
           |||||||||
Sbjct: 9   tcctaccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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