BAC Information

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BAC

Clone NameMSMg01-053G08
Chromosome12 (Build37)2 (Build37)
Map Location 115,842,940 - 115,843,297180,881,759 - 180,881,863
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream geneIghv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10
Downstream geneIghv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G08.T7 (MSMg01no053_g08.b1)MSMg01-053G08.TJ (MSMg01no053_g08.g1)
ACCAG281623AG281624
length700746
length of high quality
(start - end)		362 (42 - 403)105 (75 - 179)
definitionCHROMAT_FILE: MSMg01no053_g08.b1 PHD_FILE: MSMg01no053_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:17 2005CHROMAT_FILE: MSMg01no053_g08.g1 PHD_FILE: MSMg01no053_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:17 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,842,940 - 115,843,297)(180,881,759 - 180,881,863)
sequence
ATCATAATTTGCGGCGCTATACGACTCCTATATTCAGAGATCCGCGGAAT
TCATTTATATATCCCTTGTAGGGTGCTTGGAGATGCATCTGAGCTCAAGC
ATCATTGTGGTCATCTGACCTCAGATGCTATGTCCCAGGTATAGTCTGAT
GAAGGCAGCAAAGACTCTGTTCCCTTCTATTGTCACTGTATTACACATAG
GGAATGCTGGATTCAACTGCACCAGTGATTACCCTGTGTTTGAGTGGGTT
ATTGATTGTAATCTAGAAACCCCTTGAATATAATCTCTGAAACATGACTC
ATCATCCTCAGGTAAAAAGAGACATTTCTCTCTGCAGCTGAGCTCTGTGA
GTATTTATGCTGTCTGTATATGTTACTGGTCAAGCCAGCCTGGGAAACTT
CAGTAAAATCCATGGCACACTTACATGTAGGGTAGCAGATTTATCATATG
ACCCTCTGAATTCAAGTATCCCCATTATATAGATCTCGAGTGTATGAAAT
AACTCTGAACATTCTATGGTTTCTTTTCTTATCTACTTTGATATACTTGC
TCCCTGATTGACCCGCATGTAACATATACATGTTTAACCATAATACACAT
TTTCTTTTACATTTCTCTCCTTGCCTGCTACCCCCTTTTCATCTCTTTTG
GCTCTTTTCTACTTTTCCCACCTCTCAACAACAATTCTTTTCTTCTATTT


ACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCACCCTACCCAACCTTGATCTG
CAATAACAAGAATAGGCCTTGAGAGGACAAGAGTGAGTGGAGAGTAGTCC
TACCATCTGTCCTGCCTGGCCACTGAAGTCATGGCATGTTCTGGTACAGG
TGGGTCAATTCCAGCCCATGTGATCTAAGTCACTGATCTCCTGGCTTCTG
GTGCTGGTGTTGCTGCCATTTAAGGATTGAGGATCTGGGCCATGGAAAAC
TAGAATAGACATGGTGCTGTCTCATCAGGCACGAGCGTCATCAAGATGGC
CTTCTGTCAAAATCCAGAAATCTACACGCTAAGCCCGTGTTTGCCCCTCT
CTCCGCTCATGACCTCTCACCGTTTCCGTCTTTCCTTTTTTCGTACCATC
TCGACACTTTAGTCTTTTTTGGTTTCACTCCCCTCTTTGTTCCTTTTTCC
GTACTCACCCTATCAACTTCCTCAGTCTTTCACAATTTTTTTACGCTTTT
TCCTTTCCCCACCTTTTCTCCATGGTTCCCCTTGTTTTCCTATTTCCCCA
CCCTTTACCTTTACTTCCCCTAGTCTCTCATTCATACCTTTTCTTCCTTT
CATCATACCCTCTCCTCTCTCCCCTTCCCATTTTCCCTACAATTGAATTC
CTCTTGCATTTAATATAACCTTTTTTTCCTTTCTTCTTTCCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g08.b1 MSMg01no053_g08.b1 CHROMAT_FILE:
MSMg01no053_g08.b1 PHD_FILE: MSMg01no053_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:17 2005
         (362 letters)



>mm_chr12_115842736_115843497
          Length = 762

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcatttatatatcccttgtagggtgcttggagatgcatctgagctcaagcatcat 64
           |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggaattcatttatagatacattgtagggtgcttggagatgcatctgagctcaagcatcat 503

                                                                       
Query: 65  tgtggtcatctgacctcagatgctatgtcccaggtatagtctgatgaaggcagcaaagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtggtcatctgacctcagatgctatgtcccaggtatagtctgatgaaggcagcaaagac 443

                                                                       
Query: 125 tctgttcccttctattgtcactgtattacacatagggaatgctggattcaactgcaccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctgttcccttctattgtcactgtattacacatagggaatgctggattcaactgcaccag 383

                                                                       
Query: 185 tgattaccctgtgtttgagtgggttattgattgtaatctagaaaccccttgaatataatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgattaccctgtgtttgagtgggttattgattgtaatctagaaaccccttgaatataatc 323

                                                                       
Query: 245 tctgaaacatgactcatcatcctcaggtaaaaagagacatttctctctgcagctgagctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctgaaacatgactcatcatcctcaggtaaaaagagacatttctctctgcagctgagctc 263

                                                                     
Query: 305 tgtgagtatttatgctgtctgtatatgttactggtcaagccagcctgggaaacttcag 362
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtgagtatttaggctgtcagtatatgttactggtcaagccagcctgggaaacttcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no053_g08.g1 MSMg01no053_g08.g1 CHROMAT_FILE:
MSMg01no053_g08.g1 PHD_FILE: MSMg01no053_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:17 2005
         (105 letters)



>mm_chr2_180881559_180882063
          Length = 505

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcaccctacccaaccttgatctgcaataacaagaataggccttgagaggacaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcaccctacccaaccttgatctgcaataacaagaataggccttgagaggacaagagt 260

                                                        
Query: 61  gagtggagagtagtcctaccatctgtcctgcctggccactgaagt 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtggagagtagtcctaccatctgtcctgcctggccactgaagt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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