BAC Information

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BAC

Clone NameMSMg01-053L12
Chromosome2 (Build37)
Map Location 89,779,712 - 89,780,003
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258
Downstream geneOlfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053L12.T7 (MSMg01no053_l12.b1)MSMg01-053L12.TJ (MSMg01no053_l12.g1)
ACCAG281858AG281859
length707704
length of high quality
(start - end)
296 (46 - 341)329 (76 - 404)
definitionCHROMAT_FILE: MSMg01no053_l12.b1 PHD_FILE: MSMg01no053_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:42 2005CHROMAT_FILE: MSMg01no053_l12.g1 PHD_FILE: MSMg01no053_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGAGGATCCGC
GGAATTCAATTGTCCCGGTTGACTAAATTGAACTCACAATCAAACTTGCT
AATAAACTCAACTCCATTGCACTGCACTTACTTCACTGACTCCCATCTTG
AATGATCAAACTGAATGATTCCTGAGAGTTAGGTATATCCAATCTCTGAC
TCATTCTGTCAAATCTTTCTCAGATTCATCACTTTGTCTCAATTAGATGT
CACTGTTTGGTATTAAAGGTGTGTACTAAAGGATTCCAGTCAGAGGGACT
AATGTATATACTAATTTTGTGTCTGCATTCTAGCCAGATCATAGATATAT
AATGCCTTTGGTTATGATCAGACCATCCATGTCTTTGTATTAAAATTCCT
CTACACTTTCTGCTTCGTGGACTAACTTGAGGAATATTGGTGTATAATTC
TTCTTTTAAAATCTCGCATAATTATGCACTGAATTCATTTGAATTCGATT
TGCTTCGAACCTCATCTTACATATTAAAATGGACGCCCCAGCTTGCTTTT
CAAATCCATCTGCTTGAAATATTCTTTTCTATTACCTTACCCTGAAATAA
CGTTTATCTTTACTCTTGAGTTGCGTTTCTCTCTTGCTTACCCATCCCGA
TTCCTGTATCTTATTCCTTTGCGCAAATTAATTATCTTTTTTTCGCAGCA
ATGATTA
TTCACTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGTACACAAAGGATTTATCTTCTC
TATTCAGTTTTTTACTTAAGAAATTATGCTAATAGGGATTCATGGATATT
TATTTTAGACTCCAGGTAATAATCAAATAGTACCTATTTAATTGTTCTAA
TTTTCCTAGCTTTGGCCATTAGGAATGCTTTTTTGCTGGCTACTAGGTCC
CTTTGATGTCCCTCATTATTTTAGGTTTTTTTTTTCCGTTTTGGTTGGAA
TCCTTTAGATTGTTTTTTACTGCCTTACTTTCCTACACTGTAGTATACTT
CTCATTTGCCTTCTGTATCTCCTCCCCCAGTAGCTGTATCAGCCATTTCT
TTAAGAGTTCCTCCTCTTTTCAGTGGAGAATGGTATGAGAACTAAGATTT
GATGGTCAGGTGAGTTGATTACCACTTGGAATAACGCTTCTAGGCTCTCC
CAGCTGACAGAGTAAAGACAAAAATTCCTTATAGGTAGTTACTCTATATC
TATTCGCGCATGCACAATTGTCCGTTTATTATGCCATCCCTGCGCTCCCA
GTGTCATTCTCATCTCTACTTCACCCCTACTTGGACTTTTTTCTCTCCCC
CACCCCTCATACCACACCCCCTCCTATCCACTTGCCTTACCCTTGTTCTT
TGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_l12.b1 MSMg01no053_l12.b1 CHROMAT_FILE:
MSMg01no053_l12.b1 PHD_FILE: MSMg01no053_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:42 2005
         (296 letters)



>mm_chr2_89779506_89780202
          Length = 697

 Score =  464 bits (240), Expect = e-135
 Identities = 279/296 (94%), Gaps = 10/296 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaattgtcccggttgactaaattgaactc-acaatcaaacttgctaataaactca 65
           |||||||||||  | ||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 207 gaattcaattgaactggttgactaaattgaactcaacaagcaaacttgctaataaactca 266

                                                                       
Query: 66  actccattgcactgcacttacttcactgactcccatcttgaatgatcaaactgaatgatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actccattgcactgcacttacttcactgactcccatcttgaatgatcaaactgaatgatt 326

                                                                       
Query: 126 cctgagagttaggtatatccaatctctgactcattctgtcaaatctttctcagattcatc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctgagagttaggtatatccaatctctgactcattctgtcaaatctttctcagattcatc 386

                                                                       
Query: 186 actttgtctcaattagatgtcactgtttggtattaaaggtgtgtactaaaggattccagt 245
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 actttgtctcaattagacgtcactgtttgttattaaaggtgtgtactaaaggattccagt 446

                                                                   
Query: 246 cagagggactaatg-tatatactaattttg----tgtctgcattctagccagatca 296
           |||||||||||| | ||||||||||    |    ||||||||||||||||||||||
Sbjct: 447 cagagggactaaaggtatatactaa----gggcgtgtctgcattctagccagatca 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space:   197456
Effective search space used:   197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)