BAC Information

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BAC

Clone NameMSMg01-053O13
Chromosome2 (Build37)
Map Location 146,551,598 - 146,551,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O13.T7 (MSMg01no053_o13.b1)MSMg01-053O13.TJ (MSMg01no053_o13.g1)
ACCAG281991AG281992
length703709
length of high quality
(start - end)
246 (73 - 318)---
definitionCHROMAT_FILE: MSMg01no053_o13.b1 PHD_FILE: MSMg01no053_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:57 2005CHROMAT_FILE: MSMg01no053_o13.g1 PHD_FILE: MSMg01no053_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAAATCCGCGGA
ATTCACAGTGTATCCCTGGACTGGATCTCACTGAGATCCACTAGCCTCTG
CTTCTTCAATGCTGGGATTAAAGGTGTGTGTGACACAATTGGAGCCTTTC
TTCCCTACCTGATATTGTTCTGCAAACCTGCTGGTGGATTTTCCCCCCCT
CCCCCAGGCCCTCACTGGATGCCTCCTATTCTTAAGCCCATTTTGCAGAG
TCACCCAGGCCCAGAGAATAACCTCAAACCTCTGGTTTCTAAGTGCCATC
TACTGAGTAGAGAGAGTCCCTGTCCAGACCTAGAGAGCCACTGGCTTCTC
AAATGCTGTGTCTTGAGCACACCCCCTTGGTTTTTGGTATGCCTAATAGT
CCCATTCCCTAGGACCCTCTTCCTTTTTTCTATAACTGTCCCTCCTCCTC
AAGCCCACTACTATGGCAGACTTGTCGTGCAAGCCTGTAGCTCCATGTAC
CAAGTGTTCTCAATAACACTATGACGCTCAGTCTTTACAGTATCTGTTCA
CCTAACACGTTGTTATAATTTTCGATTATCTAATGTCTCCTCTAGGCCCT
CTTTAGTTCACTGTTGCTTCCTCGTACTCATTGATTATTCACCTGTGTAT
ATTCCCGCCCCCCTCCCATTTATCTGAACTTGTCACTTACTGTCTTTTCT
ATC
NTACTAATTGCTGTGGGAGGCCTGGCGGCCGCCTGGCTCCAAACTAGAGG
TGACCTATAGAAGTATCCCAAAAATTCAAAGAGCCAGCACCTTGTGAAAT
CTGGGAGTCACAGCTCCCATCTAACTCCAGTGCTGGGGGTGAGAGGCAGG
CAGATGGATCCTGGGTCTCCTGGCCAGTCAGGCTGGCTGAAACATTGAGC
TCAGGGTTCAGCAAGTTCTGTCTCAGAAAGAGAGAGAGAGAGAGAGAGAG
AGTGAGATAGTAGAGAGAGAGAGAACACCCCATAGTCATCTGTTACATGT
CCCGTGACTGACATAGATACTGACTATTTTTCTCTTCACCGACTGCATCT
CACCTGACATACTCTTGTCTTTCTATGCGTGCCCTCTGGTCTTGTTGTCA
CCCCTATATATGTGCTCCTCCCTTTTCCCCATTTTAAGAAATCTTACTTC
CATGATAAGCGTCTTGCAAGACATTACACGCCTATCTCTTCTTGCTTACT
TTTTCTTATCATCTCATTTATTTCAATCCTCTCCTTTTTCTCATTTTCCA
TCTATACCCCCTCTAATCTTCCCCTCGCCTTATTCTCACCTCCATGTCCA
TTCTTCCTCTGCTTATCGTTTACTACCCCTTGCGTCCTTACCTATTCCTC
TCTATTTGTATACTACCATTTTTTGTGTTTCCTATTCCCATCGTTTTAGT
TCGGACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o13.b1 MSMg01no053_o13.b1 CHROMAT_FILE:
MSMg01no053_o13.b1 PHD_FILE: MSMg01no053_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:57 2005
         (246 letters)



>mm_chr2_146551398_146552043
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatctcactgagatccactagcctctgcttcttcaatgctgggattaaaggtgtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatctcactgagatccactagcctctgcttcttcaatgctgggattaaaggtgtgtgtg 260

                                                                       
Query: 61  acacaattggagcctttcttccctacctgatattgttctgcaaacctgctggtggatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaattggagcctttcttccctacctgatattgttctgcaaacctgctggtggatttt 320

                                                                       
Query: 121 ccccccctcccccaggccctcactggatgcctcctattcttaagcccattttgcagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccccctcccccaggccctcactggatgcctcctattcttaagcccattttgcagagtc 380

                                                                       
Query: 181 acccaggcccagagaataacctcaaacctctggtttctaagtgccatctactgagtagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccaggcccagagaataacctcaaacctctggtttctaagtgccatctactgagtagag 440

                 
Query: 241 agagtc 246
           ||||||
Sbjct: 441 agagtc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)