BAC Information

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BAC

Clone NameMSMg01-054C06
Chromosome2 (Build37)
Map Location 9,091,131 - 9,091,678
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054C06.T7 (MSMg01no054_c06.b1)MSMg01-054C06.TJ (MSMg01no054_c06.g1)
ACCAG282158AG282159
length768715
length of high quality
(start - end)
430 (133 - 562)548 (76 - 623)
definitionCHROMAT_FILE: MSMg01no054_c06.b1 PHD_FILE: MSMg01no054_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:15 2005CHROMAT_FILE: MSMg01no054_c06.g1 PHD_FILE: MSMg01no054_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNGGGGNNTTCCACCTACATGAATTCCCTCC
TGGCGCNGGCTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCA
AGAGGATCCGCGGAATTCTCACCTTACCAATACCGAATGGCAGAGAAGCA
CTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTACCCCATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAACATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTGAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACCAAGAATCTCACACCAAATGTATTCACTGATAAGTGGATA
TTAGCCCCCTAACTATGGATACCCAACATATAAGATATAATTTGCTAAAC
ACATGAAACTCCAGAAGA
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGACCAGGTTGTTTAAAAAA
TATATAACCATTTTATTTTTTTTAGTTTAAGTACTTGTATGATAAGGAGC
ACAGATGGAGAAAACAGCTCTTTGTCGCAGGTTCTGGGTAAATCATTTTC
GTAGTGAAAATAAAACATTTTTTTCATCCAAATAAAAGTCAGTCCATAGT
GTTTTTTTCTCTGTGTTATTGAGGAAAGTATGGACAGTAAAATACCAAAT
ATCCAAAAATTTCCAAAGAAATATAAAATACATGAAGTGTTTTTACATTT
CACGGTATTCTCCATACAAAAGGAAAAGGTGTGTTCTTTGTTGCTGCTGT
TAAGACTCGAGTAAACCAAACAAGCCATAGCACTTATTTCAAAATATGGG
AGCTGCAGTTATAGCCGCGAGCAAACTCACTAGCACCAGCAGAGGGTTTT
ACAATTCATGAAGTTAAAAAAAAATTCCTAATTTGACTTTTGGGCCATCC
ATTAACCCCGTGATTTCCCCAAGTTCAGTTATTACTGTGAACTCCCTCCA
GTTATCTGCTTTTGCCAAATACAGACAGCTACATTTTAAAGCCACAGCAT
ATAGAAAAATAGATTTTAAAGCTTAGCCAGGGCCACTTGGGTGTTAGTTC
CAGGAAAATACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_c06.g1 MSMg01no054_c06.g1 CHROMAT_FILE:
MSMg01no054_c06.g1 PHD_FILE: MSMg01no054_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:16 2005
         (548 letters)



>mm_chr2_9090931_9091878
          Length = 948

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagaccaggttgtttaaaaaatatataaccattttattttttttagtttaagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttaaagaccaggttgtttaaaaaatatataaccattttattttttttagtttaagtact 689

                                                                       
Query: 61  tgtatgataaggagcacagatggagaaaacagctctttgtcgcaggttctgggtaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgtatgataaggagcacagatggagaaaacagctctttgtcgcaggttctgggtaaatca 629

                                                                       
Query: 121 ttttcgtagtgaaaataaaacatttttttcatccaaataaaagtcagtccatagtgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttttcgtagtgaaaataaaacatttttttcatccaaataaaagtcagtccatagtgtttt 569

                                                                       
Query: 181 tttctctgtgttattgaggaaagtatggacagtaaaataccaaatatccaaaaatttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttctctgtgttattgaggaaagtatggacagtaaaataccaaatatccaaaaatttcca 509

                                                                       
Query: 241 aagaaatataaaatacatgaagtgtttttacatttcacggtattctccatacaaaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagaaatataaaatacatgaagtgtttttacatttcacggtattctccatacaaaaggaa 449

                                                                       
Query: 301 aaggtgtgttctttgttgctgctgttaagactcgagtaaaccaaacaagccatagcactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaggtgtgttctttgttgctgctgttaagactcgagtaaaccaaacaagccatagcactt 389

                                                                       
Query: 361 atttcaaaatatgggagctgcagttatagccgcgagcaaactcactagcaccagcagagg 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 388 atttcaaaatatgggagctgcagttatagctgcgagcaaactcactagcaccagcagagg 329

                                                                       
Query: 421 gttttacaattcatgaagttaaaaaaaaattcctaatttgacttttgggccatccattaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gttttacaattcatgaagttaaaaaaaaattcctaatttgacttttgggccatccattaa 269

                                                                       
Query: 481 ccccgtgatttccccaagttcagttattactgtgaactccctccagttatctgcttttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccccgtgatttccccaagttcagttattactgtgaactccctccagttatctgcttttgc 209

                   
Query: 541 caaataca 548
           ||||||||
Sbjct: 208 caaataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)