BAC Information

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BAC

Clone NameMSMg01-054F05
Chromosome2 (Build37)
Map Location 118,804,927 - 118,960,648
singlet/doubletdoublet
Overlap geneLOC677379, Ccdc32, Rpusd2, Casc5, Rad51
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14
Downstream gene1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054F05.T7 (MSMg01no054_f05.b1)MSMg01-054F05.TJ (MSMg01no054_f05.g1)
ACCAG282294AG282295
length755695
length of high quality
(start - end)		489 (114 - 602)339 (80 - 418)
definitionCHROMAT_FILE: MSMg01no054_f05.b1 PHD_FILE: MSMg01no054_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:29 2005CHROMAT_FILE: MSMg01no054_f05.g1 PHD_FILE: MSMg01no054_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,804,927 - 118,805,411)(118,960,336 - 118,960,648)
sequence
NTTTTNNNNNNNNNNTTTTNNNNTTTTCCTCTCTCCTTCCTTTNCNNGTA
NCAGCACAANNCGGCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCAGGATACCCAGGGCTACCAGAGAAAC
ACAACAATAACAAAAAATTTACCGCATCATGATAATTTTTCCTCTTTTCT
AGGGAAAAGCACTTCAAGATCATTGGTGAGTCAGGAACTGGATTCCACAC
AGAGTACATCACTCATCCAGCAAACAAGTTGCCTGGCTACTACTGTATGT
AACCAGCACTGTTCCACGCCCACCTTCTCCATCCAACCCCTCAATCTGGA
TGGACTGGCCTAGGCTCAGGTCTCCCAAAGCCATGTCTTAAGCTGCTTGA
GGCTGGATTACATTTGGAAAAGAGCTGATGCTATAACCTAGACGCTACAA
GAGCTCTCTCTTCCAGTCCTCCGGGCAAGAATTTCCTGTGATGGCAGAAA
TAACACGCACGTGTGAATGTCTTTTAATTAGGTTAGCATACATTATGTCT
CAGCAAGAAACAGACCAAGGGTTCGTTTGCTTACATTGTGCATCAGATAG
GGTCCATGGTGGCTCCAGTCTGCGTTATCAGCTCCATTCTTGTATCAGTC
AGATGACTCGGCCTATGCTTGGAATCTGCCTACCTGGTGGGAGAGGAAAA
AGGAAAGCAGAGAAAACCTCCATCTTTCTTGAGGCACAGCCTTCAGAGAG
TGGTC

NTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTGCCATGACTCTCTTA
TTGAAAAGCTCTACGAAATAAACATTTTATAATTAGGGAGGCATATCAAC
TATTCATGTATCTTTTTTCACAATGGAGAGATGTTAGTTACATGTAGGTG
TTTGTATCTGTATGTGGGTATGTGTCTGTCAGAGACCAGAGTTACTGGAT
GGAGTTAGAAGAGGATGAAAAGCCCCTGACAGAGTGCTGGGAACCACTTT
CAGGTTCTCTATCTACAACACAGGTGTATGCTTGCAACCACTGACCCATC
TCTCCGGCTGCAAACACTAGTATCAACCAAAGCTTGACAAATTCCTAAGT
GTCAATATTGTAGCAATTTCACCAGGGTTCAGCGCAAGAATTCTATCACA
GTTTGCATGACCGCCATTTTGCCATCACCTTACCTGGTGGTTGACGCATG
AGCGATGATGTTCCCTCCAATGTGTTTTTTGGGATCTGCAGCGAACATGG
CTGCTCCATCTACTTGGGCTACTACCTGGTTGGTGATTACCACTGCGACA
CCCAACTGATGAGGGAAAAAAATGTTCGTTTTGTGACCACAGATATTCCA
AGAACCCTTAATGCCCTTCTTTAAGAAATGGCCATCTTAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_f05.b1 MSMg01no054_f05.b1 CHROMAT_FILE:
MSMg01no054_f05.b1 PHD_FILE: MSMg01no054_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:29 2005
         (489 letters)



>mm_chr2_118804723_118805611
          Length = 889

 Score =  899 bits (465), Expect = 0.0
 Identities = 480/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggatacccagggctaccagagaaacacaacaataacaaaaaatttaccgcat 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggagagccagggctaccagagaaacacaacaataacaaaaaatttaccgcat 264

                                                                       
Query: 65  catgataatttttcctcttttctagggaaaagcacttcaagatcattggtgagtcaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgataatttttcctcttttctagggaaaagcacttcaagatcattggtgagtcaggaa 324

                                                                       
Query: 125 ctggattccacacagagtacatcactcatccagcaaacaagttgcctggctactactgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggattccacacagagtacatcactcatccagcaaacaagttgcctggctactactgta 384

                                                                       
Query: 185 tgtaaccagcactgttccacgcccaccttctccatccaacccctcaatctggatggactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaaccagcactgttccacgcccaccttctccatccaacccctcaatctggatggactg 444

                                                                       
Query: 245 gcctaggctcaggtctcccaaagccatgtcttaagctgcttgaggctggattacatttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctaggctcaggtctcccaaagccatgtcttaagctgcttgaggctggattacatttgg 504

                                                                       
Query: 305 aaaagagctgatgctataacctagacgctacaagagctctctcttccagtcctccgggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaagagctgatgctataacctagacgctacaagagctctctcttccagtcctccgggca 564

                                                                       
Query: 365 agaatttcctgtgatggcagaaataacacgcacgtgtgaatgtcttttaattaggttagc 424
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 565 agaatttcctgtgatggcagaaataacactcacgtgtgaatgtcttttaattagcttagc 624

                                                                       
Query: 425 atacattatgtctcagcaagaaacagaccaagggttcgtttgcttacattgtgcatcaga 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 atacattatgtctcagcaagaaacagaccaagggttcgtttgtttacattgtgcatcaga 684

                
Query: 485 taggg 489
           |||||
Sbjct: 685 taggg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no054_f05.g1 MSMg01no054_f05.g1 CHROMAT_FILE:
MSMg01no054_f05.g1 PHD_FILE: MSMg01no054_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:29 2005
         (339 letters)



>mm_chr2_118960336_118961074
          Length = 739

 Score =  605 bits (313), Expect = e-177
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctgccatgactctcttattgaaaagctctacgaaataaacattttataattaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atttctgccatgactctcttattgaaaagctctacgaaataaacattttataattaggga 254

                                                                       
Query: 61  ggcatatcaactattcatgtatcttttttcacaatggagagatgttagttacatgtaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggcatatcaactattcatgtatcttttttcacaatggagagatgttagttacatgtaggt 194

                                                                       
Query: 121 gtttgtatctgtatgtgggtatgtgtctgtcagagaccagagttactggatggagttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtttgtatctgtatgtgggtatgtgtctgtcagagaccagagttactggatggagttaga 134

                                                                       
Query: 181 agaggatgaaaagcccctgacagagtgctgggaaccactttcaggttctctatctacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agaggatgaaaagcccctgacagagtgctgggaaccactttcaggttctctatctacaac 74

                                                                       
Query: 241 acaggtgtatgcttgcaaccactgacccatctctccggctgcaaacactagtatcaacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  acaggtgtatgcttgcaaccactgacccatctctccggctgcaaacactagtatcaacca 14

                        
Query: 301 aagcttgacaaat 313
           |||||||||||||
Sbjct: 13  aagcttgacaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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