BAC Information

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BAC

Clone NameMSMg01-055G22
Chromosome2 (Build37)
Map Location 41,638,143 - 41,638,608
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055G22.T7 (MSMg01no055_g22.b1)MSMg01-055G22.TJ (MSMg01no055_g22.g1)
ACCAG283106AG283107
length696755
length of high quality
(start - end)
477 (42 - 518)329 (76 - 404)
definitionCHROMAT_FILE: MSMg01no055_g22.b1 PHD_FILE: MSMg01no055_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:50 2005CHROMAT_FILE: MSMg01no055_g22.g1 PHD_FILE: MSMg01no055_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTTTGCTCTCCCTTTGGATTTTTTTATAGTCCTATAATAACCAGAA
GCCATGGATGGCTCATTCAAAATAAGTACTTTGGGAAATAGAAAGAATAG
TGTTTGGAGCTACATCTACAGTAATGCTTAAAGATATTTAGATCTGCATT
TGTAAAAGTTCAGCCCTTGGTTGCAGTAATGATGCTTGCTTACTTTCATA
AACATTTCCAACTTTAATATTACTGGTTTCTATTTTAATTTTATTGATAT
AATTATGTTAACCAGGAGAGAGGTGTGATTAATGATTTTCTTTGTTTTTT
TCAACCTAGGTAGCATAAACTGCTGTGACTTATATGCAGATCCAGAAAAC
TAACTGCAGAAGAATATGCATGCAATTTCCTGTGTGTTGTCTTCTTCTTT
CCCATAAGGACAAGAAACTGTCTGGAGATACAGTTGAACAGAAACAAATG
ATCGTCCTATGTGGCGGCTGAAGAGTGCTAAGAAAATAAAAAGAACTTGC
TTTTTATGAGTTACTTCAAATATAATCAGCACATAGTTTGCTTTTGGTTT
TTTCCTTCTTTCAACAGAAAAAATTTACTGTGGCTAAGCTCTTGACATTA
GCTAATAGGTTAAAGATTCTTACACATGCTTCATTTTGTGAAAGTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAG
AGGAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACATCCCTAAGATTCCACCTCACAACAGCAGAATGGCTAAGATA
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTTGTGGGATTGCAAGCTTGTACAATCACTCTGGAAAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTAATACCAGAGGACCTC
GCAATACCTCTCCTGGGTATATATCCGGAAGATGTTCCAACCGGTAAGAA
GGACATATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAGAA
GCTGGAAAGAATCCTGATGTCCCTCAACAGAGGAATGGATAAAGAAAATG
TGGCACATCTACACAATGGAATGCTACTCAACTATTAAGAAGAATGAATT
TATGACATTCCTCGGCAAATGGATGGATCTGCACGGCATCATCCTGAGTG
AGGTAACCCATTAACAAAGGAACTCACACAATATGTGTTCATTGATAAGC
GGATATTAGCCCAGAAACTTACGTTACCCAAGATATAAGATACAATTTTC
TAATTACTTGAAACTTACGAAGAACGAATATCCACGCGTGTGCATCTTGT
CCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_g22.b1 MSMg01no055_g22.b1 CHROMAT_FILE:
MSMg01no055_g22.b1 PHD_FILE: MSMg01no055_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:50 2005
         (477 letters)



>mm_chr2_41637936_41638811
          Length = 876

 Score =  841 bits (435), Expect = 0.0
 Identities = 459/467 (98%), Gaps = 1/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattctttgctctccctttggatttttttatagtcctataataaccagaagccatgga 67
           |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 208 ggaattctttgctctgactttggatttttttatagtcctataataacctgaagccatgga 267

                                                                       
Query: 68  tggctcattcaaaataagtactttgggaaatagaaagaatagtgtttggagctacatcta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggctcattcaaaataagtactttgggaaatagaaagaatagtgtttggagctacatcta 327

                                                                       
Query: 128 cagtaatgcttaaagatatttagatctgcatttgtaaaagttcagcccttggttgcagta 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagtaatgcttaaagatatttagatctgcatttgtaaaagttcagcccttggttgcagta 387

                                                                       
Query: 188 atgatgcttgcttactttcataaacatttccaactttaatattactggtttctattttaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgatgcttgcttactttcataaacatttccaactttaatattactggtttctattttaa 447

                                                                       
Query: 248 ttttattgatataattatgttaaccaggagagaggtgtgattaatgattttctttgtttt 307
           ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 448 ttttattgatataattatgctaagcaggagagaggtgtgattaatgatttcctttgtttt 507

                                                                       
Query: 308 tttcaacctaggtagcataaactgctgtgacttatatgcagatccagaaaactaactgca 367
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tt-caacctaggtagcataaactgctgtgacttatatgcagatccagaaaactaactgca 566

                                                                       
Query: 368 gaagaatatgcatgcaatttcctgtgtgttgtcttcttctttcccataaggacaagaaac 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaagaatatgcatgcaatttcctgtgtgttgtcttcttctttcccataaggacaagaaac 626

                                                          
Query: 428 tgtctggagatacagttgaacagaaacaaatgatcgtcctatgtggc 474
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 627 tgtctggagatacagttgaacagaaacaaatgatcatcctatgtggc 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space:   404422
Effective search space used:   404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)