BAC Information

Click to search

BAC

Clone NameMSMg01-055H23
Chromosome2 (Build37)
Map Location 141,877,745 - 141,878,219
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055H23.T7 (MSMg01no055_h23.b1)MSMg01-055H23.TJ (MSMg01no055_h23.g1)
ACCAG283152AG283153
length694745
length of high quality
(start - end)
509 (45 - 553)475 (75 - 549)
definitionCHROMAT_FILE: MSMg01no055_h23.b1 PHD_FILE: MSMg01no055_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:55 2005CHROMAT_FILE: MSMg01no055_h23.g1 PHD_FILE: MSMg01no055_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACCTCTGAGCACCATTTTTTAATGGGTTATTTGATTTTT
TTGGAGTACACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTGAAGATCACTTCCCAATTTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGTCTTACAGAAGCTTTGCAATTTTATG
AGGTCCCATTTTTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTACCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACAT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATC
CACTTAGATTTGATCTTAGTACAAGGAGATAGGAATGGATCAATTCTCAT
TCTTCTAAATGATAACTGCCAGTCATGCAAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGATCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATC
TATTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCTACATTGCTC
TTGACGACAGCTTTAGGTCAGGTCTGGTGATTCCCTCCAGAGAT
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGTGTAATTGTTTTGGTGTTTCTG
TGGCGTCTCTATGTACTCTTGATTTAACTGTTCAAAATTATTAACTTTTG
AGTTAATATTTACTTCTACGCATGCTTTTTGAAGGCAGTGATGTGTTGTA
AGTTACTTTACTGTAATACTCTGTGTTCTCTAACATAGACTAGAAGGTTA
TGTTTCTTGATCTTTAAACTATTTATTTTTCTTAACTCTGCTCAGGGCAC
AGACAGCTATTCCATTACTGAGTGTTTACATGGCAATGTTCTCACTCACT
CACAGTAGCTATTTCTATTTATCTTATAGCCTTTATCACTACTTGAAATC
ACATATTCCCACTACATGTGACCTTGCTGGTTTATACCTTACTGAATGCT
TCCTTGCCTAAAGTTTAGGAGAGTATCTATGACAAGATACATTATTCAAG
AATATCCTGGTTAGTTTCTGTAAGTTTGGCATACGCTAATGTTATCTGGG
AAGAAGAACCTCAGTTAATGTCTCAAGACTCTAGGGCACTTTCCTGACGA
ATGTCTGATATGGAGGGCCTACCCCACTGTGCGTAATCCAGCCCCGGGCA
TGTGGTCCTAGATGGCATAAGACAGGATTCTGAGCAGTCATAAAGAGTAT
GCCAGCCTACCCTGCCTGAAGTATGCCATGCTACTCTATGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_h23.g1 MSMg01no055_h23.g1 CHROMAT_FILE:
MSMg01no055_h23.g1 PHD_FILE: MSMg01no055_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:55 2005
         (475 letters)



>mm_chr2_141877545_141878419
          Length = 875

 Score =  857 bits (443), Expect = 0.0
 Identities = 467/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtgtaattgttttggtgtttctgtggcgtctctatgtactcttgatttaactgttca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttagtgtaattgttttggtgtttctgtggcatctctatgtactcttgatttaactgttca 260

                                                                       
Query: 61  aaattattaacttttgagttaatatttacttctacgcatgctttttgaaggcagtgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattattaacttttgagttaatatttacttctacgcatgctttttgaaggcagtgatgt 320

                                                                       
Query: 121 gttgtaagttactttactgtaatactctgtgttctctaacatagactagaaggttatgtt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtaagttactttattgtaatactctgtgttctctaacatagactagaaggttatgtt 380

                                                                       
Query: 181 tcttgatctttaaactatttatttttcttaactctgctcagggcacagacagctattcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgatctttaaactatttatttttcttaactctgctcagggcacagacagctattcca 440

                                                                       
Query: 241 ttactgagtgtttacatggcaatgttctcactcactcacagtagctatttctatttatct 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ttactgagtggttacatggcaatgttctcactcactcacagtagctatttctatttatcg 500

                                                                       
Query: 301 tatagcctttatcactacttgaaatcacatattcccactacatgtgaccttgctggttta 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tatagcctttatcactacttgaaatcacatattcccattacatgtgaccttgctggttta 560

                                                                       
Query: 361 taccttactgaatgcttccttgcctaaagtttaggagagtatctatgacaagatacatta 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 561 taccttactgaatgcttccttgcctaaagtttaggagagtacctatgacaagatgcatta 620

                                                                  
Query: 421 ttcaagaatatcctggttagtttctgtaagtttggcatacgctaatgttatctgg 475
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ttcaagaatatcctggttagtttctgtaagtttggcatacgctaacgttatctgg 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)