BAC Information

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BAC

Clone NameMSMg01-056F09
Chromosome2 (Build37)
Map Location 101,802,283 - 101,802,506
singlet/doubletsinglet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F09.T7 (MSMg01no056_f09.b1)MSMg01-056F09.TJ (MSMg01no056_f09.g1)
ACCAG283770AG283771
length703747
length of high quality
(start - end)
204 (76 - 279)165 (77 - 241)
definitionCHROMAT_FILE: MSMg01no056_f09.b1 PHD_FILE: MSMg01no056_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:58 2005CHROMAT_FILE: MSMg01no056_f09.g1 PHD_FILE: MSMg01no056_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGCTATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCG
CGGAATTCAACCAGATTCCAAGAAATGAAGACTTCTCACATGGGAATAGT
CGGCCACTGTCCACGTGGTCTGGCACAGACTGCGGCAAGCTGAGGGTAGA
GAGTGCCGATAGGGGCAAGGCACAGCTTCTCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGCACGTGTATGCATGCCTGTCTGTGTGTGTGT
GTGTGTCTATGTGTGTGTGTGCACGTGCATGCATGCCTGTGTGTGTGTGT
CTGTGTACTGAGCGGTGTCTGCTTTTGCAGAGTGTCTGACTCTCTCTCTG
TTTTGAGCTCTCTTGTTTTATCCCCCCCCCCCCAAAGTCTGTTTTCTTCT
ACTCTTTTCTTATTTGCTATTATAGACCCAACAAAGATCCTGTCTTTCGC
TCTTCTTGCCCTCGCTCACCGCGCCTTCTTCTTTCTGCTTTCCTTTGTTC
TCTCTGTATCCTTTCATTACACCTCACTCTGCTTGTTTGTCTGCTTCTTT
TTCATCTTTTCTCTTCCTGTTCCCCTGCTCCTCTTCTTTTTCCCTTCCTA
TTATGTGTTTTCTCTCACCCCTCGTTACTTTCCTTTTTCTCCTTCTCCCC
CCCGTCCCTGTTCTCTTTTTTTATTCTCTTGCCATTCCCCGTTCTTTTTT
CTT
TTATCGATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACTCAAAGCAAAGCAAAGAGG
AAGGGTTGATTTTGGCTTACAGCTTGAGCGGATCCAGACTATCATGGAGG
AGGCATGGTGGGAGGAGAGAGGTGACTGGTCACGTCATATCTGCAGTCAG
GAAGGAGGGAGAGGGAAAAGGAGAGGGTGGGGAGGAGAGGTCCCCTTTCT
TCCCTTTTCCGCTTCCTTCGTCTCTCCGCCGTCACTTCCATTTCATTCCC
TCTTATTTCTTCTCCTTCTTCTTTTCTTTTTTTTTATCTTCTCCTGTTTT
TCGTTGGTGTTTTTTTCTTTTTTTTTTTTCCCCCCCCCCCCCTCATTTTT
TACCTTTTATTTTTCTTTTTCTTCTATCTAATCCTTTCAAATCATAAATT
AAAGCTCCTTTCTTGTCGTTTCTTTTCCCTTTCTCCACTTTTGTTTCTTT
CCGCTATCCTACTTCTTTCTTCTTCCCCCCTTGTCTCATCTCTCATTTTC
CTCTACTTTTATCACTTCTTTCTTTTTCTACTCTTTATGTTCCACATCTT
TTTTCCTTGCCATCTTCCACACCCCTCGCCTTTCTCATTTTCTCTACGTC
CCTTTTCGTTACCCTCTTTCTATTCCTTTTTTCCTCGTCTCTTCCTTTCA
CTCTTTCCCTATTTTTATATAAGTTTTCTCTCGTCATTCGCTTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f09.b1 MSMg01no056_f09.b1 CHROMAT_FILE:
MSMg01no056_f09.b1 PHD_FILE: MSMg01no056_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:58 2005
         (204 letters)



>mm_chr2_101802083_101802686
          Length = 604

 Score =  252 bits (130), Expect = 2e-71
 Identities = 188/228 (82%), Gaps = 36/228 (15%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagacttctcacatgggaatagtcggccactgtccacgtggtctggcacagactgcgg 60
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgaagacttcccacatgggaatagtcggccactgtccacgtggtctggcagagactgcgg 260

                                                                       
Query: 61  caagctgagggtagagagtgccgataggggcaaggcacagcttctc--tgtgtgtg---- 114
           |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
Sbjct: 261 caagctaagggtagagagtgccgataggggcaaggcacagcttctcggtgtgtgtgcacg 320

                                                                       
Query: 115 ----------------tgtgtgtgtgtgt--------gtgtgt--gtgtgtgtgtgcacg 148
                           |||||||||||||        ||||||  |||||||||||||||
Sbjct: 321 tgcatgcatgcctgtctgtgtgtgtgtgtctatgtgagtgtgtctgtgtgtgtgtgcacg 380

                                                           
Query: 149 tgtatgcatgcctgtctgtgtgtgtgtgtgtgtctatgtgtgtgtgtg 196
           || ||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 381 tgcatgcatgcctgtctgtgtgtgtgtgt----ctatgtgtgtgtgtg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)