Query= MSMg01no056_f24.b1 MSMg01no056_f24.b1 CHROMAT_FILE:
MSMg01no056_f24.b1 PHD_FILE: MSMg01no056_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:01 2005
(475 letters)
>mm_chr2_9455780_9456655
Length = 876
Score = 801 bits (414), Expect = 0.0
Identities = 456/470 (97%), Gaps = 3/470 (0%)
Strand = Plus / Plus
Query: 8 ttctgtcgatttgccca-aaa-gcagccagtgcatcaaggattggcaagcaagagatggt 65
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgtcgatttg-acataaatgcagccagtgcatcaaggattggcaagcaagagatggt 266
Query: 66 atagaatagtataaaataacaattgtgaaacctaaacaatttccagggtccactgtagag 125
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atagaatagtataaaatgccaattgtgaaacctaaacaatttccagggtccactgtagag 326
Query: 126 caaagtgcctcttcttagtacaggagtatatattcccacaggtgggtagcaaatgttctt 185
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 327 caaagtgcctcttcttagtgcaggagtatatattcccacacatgagtagcaaatgttctt 386
Query: 186 actgaaagaatgcaaacacagtgaattcttaaagggtaccaggcaactgtgaagcaataa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actgaaagaatgcaaacacagtgaattcttaaagggtaccaggcaactgtgaagcaataa 446
Query: 246 acatcttcaatatctttattgaatttattttcagttatgcatctccactcatgttctgtg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acatcttcaatatctttattgaatttattttcagttatgcatctccactcatgttctgtg 506
Query: 306 gattcccatgaaggccagaagagggtgttagatcccctggagctgcctgtgagtactggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gattcccatgaaggccagaagagggtgttagatcccctggagctgcctgtgagtactggg 566
Query: 366 aattgagctccactcccctggaagagcatccagtgttctgaactactgaagcatctctcc 425
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 567 aattgaactccactcccctggaagagcatcaagtgttctgaactactgaaccatctctcc 626
Query: 426 agaccctcatcttcactgtcttgattatggggctaccatcatacttgtat 475
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 agaccctcatcttcactgtcttgattatggggctaccatcatacgtgtat 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_f24.g1 MSMg01no056_f24.g1 CHROMAT_FILE:
MSMg01no056_f24.g1 PHD_FILE: MSMg01no056_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:01 2005
(441 letters)
>mm_chr2_9634717_9635557
Length = 841
Score = 735 bits (380), Expect = 0.0
Identities = 425/440 (96%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 1 acatcatacaatcacagaaactacctgcagctggcaaaaatcacacccctgctagaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 acatcatacaatcacagaaactacctgcagctggcaaaaatcacacccctgctagaggca 774
Query: 61 gatcatagtcagctgctgtggacaatctgaagcagccccatatcccacacctaggattaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gatcatagtcagctgctgtgaacaatctgaagcagccccatatcccacacctaggattaa 714
Query: 121 aatgaaaacggattcttagaatattttttttttgtggttttaaaagaaaccaaaatgtga 180
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 713 aatgaaaacagattcttagaat-ttttttttttgtggttttaaaagaaaccaaaatgtga 655
Query: 181 gaattgtcacaacacaaaattgtgtgtgtagttgacgttcataatgatggcacagcttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattgtcacaacacaaaattgtgtgtgtagttgacgttcataatgatggcacagcttgt 595
Query: 241 attgactgatcacttttgaaaaagttgcacaaaatattatttatgacagtgactgcactt 300
||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||
Sbjct: 594 attgactgatcacttttgaaaaagttgtacaacatattatttaggactgtgactgcactt 535
Query: 301 ccagtgtaccatacaggtgcactggcagtgactacactattgagatacacttgattttct 360
| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 534 caagtgtaccgtacaggtgcactggcagtgactacactattgagatacactccactttct 475
Query: 361 ctctctacttcatctccatggacagcccccatccttctgtcaatttaaccctttctatcc 420
|| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 474 ctttctacttcatctccatggacagcccccatccttctgtcaatttaactcttcctatcc 415
Query: 421 tcatctgtccccactctgta 440
||||||||||||||||||||
Sbjct: 414 tcatctgtccccactctgta 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
