Query= MSMg01no056_i04.b1 MSMg01no056_i04.b1 CHROMAT_FILE:
MSMg01no056_i04.b1 PHD_FILE: MSMg01no056_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:11 2005
(405 letters)
>mm_chr2_149491229_149492033
Length = 805
Score = 719 bits (372), Expect = 0.0
Identities = 394/404 (97%), Gaps = 6/404 (1%)
Strand = Plus / Plus
Query: 5 gaattccataaattcca---actctagtctaggagtaagactatatggtcgctaacgatc 61
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataaa---caggaactctagtctaggagtaagactatatggtcgctaacgatc 261
Query: 62 tgcctttaaaggagctgcttaatttctggaagccttagatacttctgtcagaggaagatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcctttaaaggagctgcttaatttctggaagccttagatacttctgtcagaggaagatg 321
Query: 122 agaaaacatctgacctcactgtgtcaccttggggactcacagtgacaaccacgtaaaatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaaaacatctgacctcactgtgtcaccttggggactcacagtgacaaccacgtaaaatt 381
Query: 182 cagaccatgacattcctgtaaacccacacaccatgaatgccacttttgtgactaccatta 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caggccatgacattcctgtaaacccacacaccatgaatgccacttttgtgactaccatta 441
Query: 242 ttattaacagttatcagtgttctgcttatcagttatcctcttgaccaagtcaggatgaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttattaacagttatcagtgttctgcttatcagttatcctcttgaccaagtcaggatgaag 501
Query: 302 atgaaggctgtctgtctccatgcgcagatcactaggctcacaatattaaatttatttgct 361
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 502 atgaaggctgtctgtctccatgtgcagatcactaggctcacaatattaaattaatttgct 561
Query: 362 tggggcttcaagggtaaggttgtttttgttgcttttgttgttga 405
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 tggggcttcaagggtaaggttgtttttattgcttttgttgttga 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_i04.g1 MSMg01no056_i04.g1 CHROMAT_FILE:
MSMg01no056_i04.g1 PHD_FILE: MSMg01no056_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:12 2005
(444 letters)
>mm_chr2_149570666_149571509
Length = 844
Score = 843 bits (436), Expect = 0.0
Identities = 442/444 (99%)
Strand = Plus / Minus
Query: 1 ttaactcacagaggattttaaaggacaggtaaaagaaatagagggacagtaattttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttaactcacagaggattttaaaggacaggtaaaagaaatagagggacagtaattttgtgt 585
Query: 61 tgacagccacatgccaggaacttgtatctatcggggcaggaaaaggagagagagagacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgacagccacatgccaggaacttgtatctatcggggcaggaaaaggagagagagagacta 525
Query: 121 aagagattttcagggctaccaggttgggaagcactcaatattgaaaaggcaagagtggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aagagattttcagggctaccaggttgggaagcactcaatattgaaaaggcaagagtggtt 465
Query: 181 tatacccagggtcacagagaagtaggacagggtctttggagcttcacaaaggaagcaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tatacccagggtcacagagaagtaggacagggtctttggagcttcacaaaggaagcaggg 405
Query: 241 agggaattggttaacagatttcctccctgtgttgtagcaatgtctttggatgaatcctag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agggaattggctaacagatttcctccctgtgttgtagcaatgtctttggatgaatcctag 345
Query: 301 agacaaggacagacaaggaaggttctcttcatgggaaacctgagcaagtaaataataagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agacaaggacagacaaggaaggttctcttcatgggaaacctgagcaagtaaataataagg 285
Query: 361 ccaagtttaatatacatctagaaatggaaacacattatacttaatggcatgccaagaatg 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 284 ccaagtttaatatacatctagaaatggaaacacattatagttaatggcatgccaagaatg 225
Query: 421 gatgatatgtgcttccatttaggc 444
||||||||||||||||||||||||
Sbjct: 224 gatgatatgtgcttccatttaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
