BAC Information

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BAC

Clone NameMSMg01-057C10
Chromosome2 (Build37)
Map Location 139,969,187 - 139,969,649
singlet/doubletsinglet
Overlap geneEsf1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365
Downstream gene2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057C10.T7 (MSMg01no057_c10.b1)MSMg01-057C10.TJ (MSMg01no057_c10.g1)
ACCAG284381AG284382
length754680
length of high quality
(start - end)
463 (122 - 584)508 (55 - 562)
definitionCHROMAT_FILE: MSMg01no057_c10.b1 PHD_FILE: MSMg01no057_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:00 2005CHROMAT_FILE: MSMg01no057_c10.g1 PHD_FILE: MSMg01no057_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTGTGGTTTTTTTTNGTTGCNTTTGTTTTTCTTCCTNNCCCCTCCGCC
CNNNNGCTCTATAATTGCGGCGCTAATACGACTCCTATTCAAAGAGGTCC
GCGGAATTCAAATATTGCACTCTGGGCCTCATTAGGGAGCTATTGTTTTC
TGTATTTGTCTCAAGTTTATTTGTATGTTTTTCTTGCCTTTCATGCAGTT
TGTAATTACAATAACATACTACTAAGCTGTCCTCTAACTTCTAGCCAAGT
CTGGGAAAACCATTCTGATAACTTATTTATGGCAAATACTGAAAAATTAC
TTGTTCTATTGTTATTTTTATACATTTATGTTATTTTTATATAATTGTAG
GCAAGGTAGAAAATGAATGAAATCTTTTACATGAATGGCTAAGATATAAG
GAAACAAGAAGAATTCCTGTGTCAAGTCTCAATAAGGAAGCTCAAATAGA
AATATTAAGTTAGTTCACAACCCAGAAGTTCTCCTTGGGGACACACACTA
CGCTAATATAGTCTAGTATGGATTTTGGGTTGTTATGGGCTCTCAGCCAA
GGAGGTGGGGGCCAAAGTTTGGAGTCTGATCATGGTGGGAGGTCCCAGAA
TCCTTAAATGTGCCACCAGTAGATGATGACCCTCCCTCTACAGTTCTGGG
GGAATACATGAAGATGGGGAGTAAAAATACAGTTCTCCTCTGAGACTTTG
TAACCACAAAAGCCCACAACCCATGGACTTGTGGCTGCAATTCACACTAC
TTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACGACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGATATAGTACTACCTGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACGGGTAAGAAGGACACATGCTCCACTATGC
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACTAAGA
AACTCACACAATATGTACTCACTGATAAGTGGAAATTAGCCCAAAACCTA
GGATACCCTAGATATAAGATACAATTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_c10.b1 MSMg01no057_c10.b1 CHROMAT_FILE:
MSMg01no057_c10.b1 PHD_FILE: MSMg01no057_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:00 2005
         (463 letters)



>mm_chr2_139968987_139969849
          Length = 863

 Score =  859 bits (444), Expect = 0.0
 Identities = 459/464 (98%), Gaps = 2/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggcctcattagggagctattgttttctgtatttgtctcaagtttatttgtatgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggcctcattagggagctattgttttctgtatttgtctcaagtttatttgtatgtttt 260

                                                                       
Query: 61  tcttgcctttcatgcagtttgtaattacaataacatactactaagctgtcctctaacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcctttcatgcagtttgtaattacaataacatactactaagctgtcctctaacttc 320

                                                                       
Query: 121 tagccaagtctgggaaaaccattctgataacttatttatggcaaatactgaaaaattact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagccaagtctgggaaaaccattctgataacttatttatggcaaatactgaaaaattact 380

                                                                       
Query: 181 tgttctattgttatttttatacatttatgttatttttatataattgtaggcaaggtagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctattgttatttttatacatttatgttatttttatataattgtaggcaaggtagaa 440

                                                                       
Query: 241 aatgaatgaaatcttttacatgaatggctaagatataaggaaacaagaagaattcctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaatgaaatcttttacatgaatggctaagatataaggaaacaagaagaattcctgtg 500

                                                                       
Query: 301 tcaagtctcaataaggaagctcaaatagaaatattaagttagttcacaacccaga-agtt 359
           |||||||||||||||||||||||||||||||||||||||||||||| || | ||  ||||
Sbjct: 501 tcaagtctcaataaggaagctcaaatagaaatattaagttagttcagaagc-agggagtt 559

                                                                       
Query: 360 ctccttggggacacacactacgctaatatagtctagtatggattttgggttgttatgggc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctccttggggacacacactacgctaatatagtctagtatggattttgggttgttatgggc 619

                                                       
Query: 420 tctcagccaaggaggtgggggccaaagtttggagtctgatcatg 463
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctcagccaaggaggtgggggccaaagtttggagtctgatcatg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)