Query= MSMg01no057_f05.b1 MSMg01no057_f05.b1 CHROMAT_FILE:
MSMg01no057_f05.b1 PHD_FILE: MSMg01no057_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:14 2005
(419 letters)
>mm_chr2_74415041_74415859
Length = 819
Score = 810 bits (419), Expect = 0.0
Identities = 419/419 (100%)
Strand = Plus / Plus
Query: 1 taccaaaaccacatgtaatatctaaatgaagcatgtgcctaacattccattaaatgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccaaaaccacatgtaatatctaaatgaagcatgtgcctaacattccattaaatgagtg 260
Query: 61 catattttaattatttcataatttaaaatctgtaagtataaaataagtttgtgtttttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catattttaattatttcataatttaaaatctgtaagtataaaataagtttgtgtttttac 320
Query: 121 taaaaatatttttctcatttaccctagcatggaaataaataaatggagtatttttcaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaatatttttctcatttaccctagcatggaaataaataaatggagtatttttcaagc 380
Query: 181 acttcccattataataaacgtataagccttcatagaaaacaacaaaagaaatggagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttcccattataataaacgtataagccttcatagaaaacaacaaaagaaatggagtttt 440
Query: 241 gtggtttttaacctttgattccaaacttaaatataaactagtcacctttaacagcatctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtttttaacctttgattccaaacttaaatataaactagtcacctttaacagcatctc 500
Query: 301 cacattatactacacaatttgggtttaaatgtgatttgttcgaaatcgctttcaaatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacattatactacacaatttgggtttaaatgtgatttgttcgaaatcgctttcaaatgtc 560
Query: 361 caaataggcaactctgaaatatcttacaccaggtttattgcccaaaaaaaaaaaaaaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaataggcaactctgaaatatcttacaccaggtttattgcccaaaaaaaaaaaaaaaa 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f05.g1 MSMg01no057_f05.g1 CHROMAT_FILE:
MSMg01no057_f05.g1 PHD_FILE: MSMg01no057_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:14 2005
(628 letters)
>mm_chr2_74537524_74538551
Length = 1028
Score = 1174 bits (607), Expect = 0.0
Identities = 625/635 (98%), Gaps = 7/635 (1%)
Strand = Plus / Minus
Query: 1 attgtggccctggctacaggatagtggaagtaccaagacaccttccaaagttgtgctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 attgtggccctggctacaggatagtggaagtaccaagacaccttccaaagttgtgctctc 899
Query: 61 ccgccaggtgtgcttacacaatcggaagcttcaaggtgtctcagagaccctccaggtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ccgccaggtgtgcttacacaatcggaagcttcaaggtgtctcagagaccctccaggtgct 839
Query: 121 cgg-------acctttagcaacgtgtcccttttcagggatgggacagtctgatgattatg 173
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cggaccgccaacctttagcaacgtgtcccttttcagggatgggacagtctgatgattatg 779
Query: 174 ttattttgcaaagacacagagagcagtcacacaacgttcagggccagcggctgggctcca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttattttgcaaagacacagagagcagtcacacaacgttcagggccagcggctgggctcca 719
Query: 234 tttgttcagatcagcatttatttgttggaagcggtaacatttacaactggtcctcaggca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tttgttcagatcagcatttatttgttggaagcggtaacatttacaactggtcctcaggca 659
Query: 294 ggaatatggaaggcaacctcccgaggccgcccaatgggagctcagccctcccggggagaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggaatatggaaggcaacctcccgaggccgcccaatgggagctcagccctcccggggagaa 599
Query: 354 agtagcttccccggtgctctgaggactaagcctatccccaccccacccccaatctcgcgc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agtagcttccccggtgctctgaggactaagcctatccccaccccacccccaatctcgcgc 539
Query: 414 cccagggcccaaggtttctcggtaggcctctgtggaagtcagtccgcgggctccccgagg 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 538 cccagggcccaaggtttctcggtaggcctctgtggaagtcagtccgccggctccccgagg 479
Query: 474 aaaggggttttcctgccttgagcagctgagttggattttagttgggagagcagggtgggg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaggggttttcctgccttgagcagctgagttggattttagttgggagagcagggtgggg 419
Query: 534 gtgtccacactctgtcttccttcagattctcggaattagatagttggtcctgtttgggag 593
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 418 gtgtccacactctgtcttccttcagattctcggaattagatcgttggccctgtttgggag 359
Query: 594 gctggatagggtgagactaaactacagcacttttc 628
|||||||||||||||||||||||||||||||||||
Sbjct: 358 gctggatagggtgagactaaactacagcacttttc 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
