Query= MSMg01no057_g04.b1 MSMg01no057_g04.b1 CHROMAT_FILE:
MSMg01no057_g04.b1 PHD_FILE: MSMg01no057_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:19 2005
(483 letters)
>mm_chr2_43391854_43392737
Length = 884
Score = 874 bits (452), Expect = 0.0
Identities = 473/482 (98%), Gaps = 5/482 (1%)
Strand = Plus / Plus
Query: 5 gaattcctggtctta---cccatctttctgctacaggtatcccagcatttgtgactatag 61
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggtcttaagtc--atctttctgctacaggtatcccagcatttgtgactatag 262
Query: 62 gtacaagacaatgtccagttcattttcttcctatttcattaccatgtgttttggttttac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtacaagacaatgtccagttcattttcttcctatttcattaccatgtgttttggttttac 322
Query: 122 cttgtgaaatcctaatacatttaaatagatataataaactaacaacaagtttttatgaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttgtgaaatcctaatacatttaaatagatataataaactaacaacaagtttttatgaat 382
Query: 182 aaaaataattcagaaacaataatgataacttaaaaatttaaccaaaatcacaaaatattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaaataattcagaaacaataatgataacttaaaaatttaaccaaaatcacaaaatattt 442
Query: 242 gatcatcttctatttaaaaggcagcacagagagataaaatctccagtacacgtgaagaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatcatcttctatttaaaaggcagcacagagagataaaatctccagtacacgtgaagaat 502
Query: 302 aatctagaaaagatgacaactgccctagtcagttcagggagctctgacaaaatggggttg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatctagaaaagatgacaactgccctagtcagttcagggagctctgacaaaatggggttg 562
Query: 362 aatattcataaccaatagaaattatttcccacactgcttatgtctgagttatccaagatc 421
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatattcataaataatagaaattatttcccacactgcttatgtctgagttatccaagatc 622
Query: 422 aaagctatgaccaatactgaaagttcttcacaaagatggtgcctgtttccacatcctctg 481
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaagttatgacaaatactgaaagttcttcacaaagatggtgcctgtttccacatcctctg 682
Query: 482 aa 483
||
Sbjct: 683 aa 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_g04.g1 MSMg01no057_g04.g1 CHROMAT_FILE:
MSMg01no057_g04.g1 PHD_FILE: MSMg01no057_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:19 2005
(343 letters)
>mm_chr2_43545031_43545773
Length = 743
Score = 632 bits (327), Expect = 0.0
Identities = 339/343 (98%)
Strand = Plus / Minus
Query: 1 cctggttctggatatacggacagttataagtcctctgacaagtgtgctggaatctgaact 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctggtactggatatacggacagttataagtcctctgacaagtgtgctggaatctgaact 598
Query: 61 caggtaccccagaagtcatccactctcttagctgctaagccatctcttcagctctcattt 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 597 taggtaccccagaagtcatccactctcttaactgctaagccatctcttcagctctcattt 538
Query: 121 ttcataatgtaattgggtcttctcaactttccttgcaggtgagtctctaaaggcggggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttcataatgtaattgggtcttctcaactttccttgcaggtgagtctctaaaggcggggca 478
Query: 181 gtttttcactaggcagtacattagatgcccgtggctgtagaaactgccttctaactgaag 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gttcttcactaggcagtacattagatgcccgtggctgtagaaactgccttctaactgaag 418
Query: 241 gacaataaaattaaacttgtacatttggaaaactggaagttatttaaggtgggttcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gacaataaaattaaacttgtacatttggaaaactggaagttatttaaggtgggttcttct 358
Query: 301 aaatgtttatttctgaaatcttctgtagactctggtctggacc 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaatgtttatttctgaaatcttctgtagactctggtctggacc 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
