CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAAATATCTGCAACTACTAAATATATGTAATTTATAAATAGAT
ACCTGTGATACTGAGTATATTGTTTTCTCAGTATTTGCTTAAAGCTTTTA
GACTCTACACACACACACACACACACACACACACACACACACTTTGAAAT
TCACACTGAAAATATAGGTAAGGGTTTTTGTGATGAGGTTTCTCCAGGTC
TCCCATCCCTTCTTTTCCTTTCCACAAACATTCCTTTAATATGAAAACTT
TCTGGGCACCATAAAAATTGCTTTAGGAAACACATTAATATATGAATATT
CCCATTTCAGAAAAGACAAAACAGTTTACGAACAACCATGAAAACAGTTC
CTCTTCACGATACATACCACACAATGTCACATCTAGCCTTACAAAGCTAG
GGTGTTAATTTGAAATATTCATCTATATTTGTTGAATTTGTTTCTCTTTG
AAGACAATAGTGTAACTATGAAATAATAGAGAAGAATGTTGAGATGGATT
CCACTGAAAGATTGATAGGTTAGTGGAATTAATATATTAACACAGTAATT
GGCATGGTGTTGGTTAAGAGAGTATCAAATGCCTTCACTTCACAGGGATT
GTTAAATAAGAATAATGGTCCTAACTTTAAGACAGGCGACCTCTCTGCAG
AC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTACGAGGAGCTAGAGAAAGAACCAA
GGAGCTAATGGGATCTGCAATTCTATAGGTGGAACAACAATATGAACTAA
CCAGTACCCCGGAGCTCTTGACTCTAGCTGTATATGTATCAAAAGGTGGC
CTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACAGGGG
AATGCCAGGGCCAAAACGTGGGAGTGGGTCGGTAGGGGACTGGGCGGGAG
GGTATGGGGGACTTTTGGGATAACATTGGAAATGTAAATGAGGAAAATAC
CTAGTAAAAAATATTAAAAAAAAAACAAAAGAATCCCTTACTTACTGTGT
GGAAGCATCACCTGCCACCAAAATGCCAATGGCCTATTATTTGAGGCATG
GAATAGAAGGTGGGATATTTGACAGAGAGAGAGAGGATTCTAGGAATAAG
TTTAAGTGGAAGATTCACTATCCAGACTCTGAGGAAATGGATGTATGAAA
CAGAGGAAAGGTAACCAGCTATGTGAAACACATACAATAGAATAAACGGA
TTATGTAAGTCATGAGCTAATCAGGGAATAAGCCCATGCTTATGACCTTG
GGATTTATTTATACATAAATAGCTTCTGAGTCATTATTCAGAAACAGGCA

Query= MSMg01no057_k05.b1 MSMg01no057_k05.b1 CHROMAT_FILE:
MSMg01no057_k05.b1 PHD_FILE: MSMg01no057_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:39 2005
         (615 letters)



>mm_chr2_95549871_95550885
          Length = 1015

 Score = 1006 bits (520), Expect = 0.0
 Identities = 598/646 (92%), Gaps = 36/646 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaaatatctgcaactactaaatatatgtaatttataaatagatacctgtgat 64
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaattcaaaaaatatttgcaactactaaatatatgtaatttataaatagatacctgtgat 230

                                                                       
Query: 65  actgagtatattgttttctcagtatttgcttaaagcttttagactctacacacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actgagtatattgttttctcagtatttgcttaaagcttttagactctacacacacacaca 290

                                                                       
Query: 125 cac----------------------------------acacacacacacacacacacttt 150
           |||                                  ||| ||| |||||||||||||||
Sbjct: 291 cacagagagagagagagagagagagagagagagacagacagacagacacacacacacttt 350

                                                                       
Query: 151 gaaattcacactgaaaatataggtaagggtttttgtgatgaggtttctccaggtctccca 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaaattcacactgaaaatataggtaagggtttttgtgatgaggtttctccaggtctccca 410

                                                                       
Query: 211 tcccttcttttcctttcca-caaacattcctttaatatgaaaactttctgggcaccataa 269
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcccttcttttcctttccatcaa-cattcctttaatatgaaaactttctgggcaccataa 469

                                                                       
Query: 270 aaattgctttaggaaacacattaatatatgaatattcccatttcagaaaagacaaaacag 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaattgctttaggaaacacattaatatatgaatattcccatttcagaaaagacaaaacag 529

                                                                       
Query: 330 tttacgaacaaccatgaaaacagttcctcttcacgatacataccacacaatgtcacatct 389
           ||||||||||||||||||||||||||||||||||||||||||  | |||||| |||||||
Sbjct: 530 tttacgaacaaccatgaaaacagttcctcttcacgatacataggaaacaatgccacatct 589

                                                                       
Query: 390 agccttacaaagctagggtgttaatttgaaatattcatctatatttgttgaatttgtttc 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agccttacaaagctagggtgttaatttgaaatattcatctatatttgttgaatttgtttc 649

                                                                       
Query: 450 tctttgaagacaatagtgtaactatgaaataatagagaagaatgttgagatggattccac 509
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 650 tctttgaagacaatagtgtaactgtgaaataatagagaagaatgttgagatgcattccac 709

                                                                       
Query: 510 tgaaagattgataggttagtggaattaatatattaacacagtaattggcatggtgttggt 569
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 710 tgaaagactgataggttagtggaattaatatattagcacagtaattggcatggtgttggt 769

                                                         
Query: 570 taagagagtatcaaatgccttcacttcacagggattgttaaataag 615
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 taagagagtatcaaatgccttcacttcacagggattgttaaataag 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)