BAC Information

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BAC

Clone NameMSMg01-057K07
Chromosome2 (Build37)
Map Location 88,459,154 - 88,459,702
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277
Downstream geneOlfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K07.T7 (MSMg01no057_k07.b1)MSMg01-057K07.TJ (MSMg01no057_k07.g1)
ACCAG284750AG284751
length692697
length of high quality
(start - end)		551 (67 - 617)548 (75 - 622)
definitionCHROMAT_FILE: MSMg01no057_k07.b1 PHD_FILE: MSMg01no057_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:39 2005CHROMAT_FILE: MSMg01no057_k07.g1 PHD_FILE: MSMg01no057_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGACCGCGGAA
TTCTCCCCTACCTTTGTGTGAGGTGAATATGTGCCTTGAGCTTTCCTATA
GTTTCTTTAATGAATGTGGATGACCAAGCATTTGGAGCATAGATATTCAG
AATTGAGAGTTCATCTTGGAAGATTTTTACCTTTGATGTGTATGAAGTGC
CCCTCCTTGTCTTTTTTGATAGCCTTGGGTTGGAAGTCGATTTTATTCGA
TATTAGAATGGCTACTCCAGCTTGTTTCTTAGGACAATTTGCTTGGAAAA
TTGTTTTCCAGCCTTTTACCCTGAGATAGTGTATGTCTTTTTCCCTGGGG
GGGGTGTTCCTTTAAGCAGCAAAATTTGGGGTCCTGTATGTGTAGCCAGT
CTATTAGTCTGCCTTTTTATTTGGGAATTGAGTCCATTGATATTAACAGA
TATTAAGGAAAAGTAATTGTTGCTTCCTGTTATTTTTGTTTTTAGAGTTG
GAATTCTGTTCCTGTGGCTGTCTTCTTTTAGGTTTGTTGAAGGATTACTT
TCTTGCTTTTTCTAGGATGTAGTTTTAGTCTTTGTGTTGGTGTTTTCCTA
TTATTATTCTCTGAAGGGCTGGATTCGTGGAAAGATATTGTGTGAACTTG
GTTTTGTCATGGAATACTTTGGTTTCTCCTACGGTAATTGAA

NCAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCATACCCCATTTTTT
TGATTGGATTGTTTGATTTTTGGAGGTTAGCTTCTTGAGATTCAGACAGT
GGAAATGACATGTGAACTTAATTCAAGTAAAAGAACATTGGAGTAGGTTG
TAAAGGACACAATAATCTTTCTATGAAAAGTATTTATAATTGCTTGTAAA
CTTAGGCATCTTCTGTTGTTTAGATAATTATAGTAAAGTCTGTCAATAGA
TGAGCTACACCAGGTCTGCTCAGCCTATTATTTCTAACGTTTACTTTCCA
TTCTTCTTCATAATTGACAAGAAAAGTATTGACAAACAGAAGGCACCAAG
GAATATCTCTGTATCCAACCAGTTACCTGGTACATGCCTTGCCTGGGCTC
CACCTACAGAACTGTAAAAAGAAACACAAAACAAACTTGAAAGCACAGCA
CCTCCCCAGAGAACATCATAAAAATGCTCTGTATGAACTGTAGTAGGCTA
GTTCTCAGCATGACAATATCTATAATTCCCTTCCCATATTACAAAAAGAA
AAAGAACCTCAAATGTTGTAATCAGTAAATGGACTATCAGTCATTAAAAT
TTTGTCATGAATGAGATACATGATTTTTACAGATCATTTATAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k07.g1 MSMg01no057_k07.g1 CHROMAT_FILE:
MSMg01no057_k07.g1 PHD_FILE: MSMg01no057_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:39 2005
         (548 letters)



>mm_chr2_88458955_88459902
          Length = 948

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%), Gaps = 1/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttagctca-taccccatttttttgattggattgtttgatttttggaggttagctt 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tctgtttagctcaataccccatttttttgattggattgtttgatttttggaggttagctt 259

                                                                       
Query: 60  cttgagattcagacagtggaaatgacatgtgaacttaattcaagtaaaagaacattggag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttgagattcagacagtggaaatgacatgtgaacttaattcaagtaaaagaacattggag 319

                                                                       
Query: 120 taggttgtaaaggacacaataatctttctatgaaaagtatttataattgcttgtaaactt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggttgtaaaggacacaataatctttctatgaaaagtatttataattgcttgtaaactt 379

                                                                       
Query: 180 aggcatcttctgttgtttagataattatagtaaagtctgtcaatagatgagctacaccag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 aggcatcttctgttgtttagataattatagtaaagtctgtcaatagatgagctacacaag 439

                                                                       
Query: 240 gtctgctcagcctattatttctaacgtttactttccattcttcttcataattgacaagaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtctgctcagcctattatttctaacgtttactttccattcttcttcataattgacaagaa 499

                                                                       
Query: 300 aagtattgacaaacagaaggcaccaaggaatatctctgtatccaaccagttacctggtac 359
           ||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||
Sbjct: 500 aagtattgacaaacaaaaggtaccaaggaatatctctgtatctaagcagttacctggtac 559

                                                                       
Query: 360 atgccttgcctgggctccacctacagaactgtaaaaagaaacacaaaacaaacttgaaag 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 atgccttgcctgggctccacctacacaactgtaaaaagaaacacaaaacaaacttgaaag 619

                                                                       
Query: 420 cacagcacctccccagagaacatcataaaaatgctctgtatgaactgtagtaggctagtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacagcacctccccagagaacatcataaaaatgctctgtatgaactgtagtaggctagtt 679

                                                                       
Query: 480 ctcagcatgacaatatctataattcccttcccatattacaaaaagaaaaagaacctcaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcagcatgacaatatctataattcccttcccatattacaaaaagaaaaagaacctcaaa 739

                    
Query: 540 tgttgtaat 548
           |||||||||
Sbjct: 740 tgttgtaat 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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