BAC Information

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BAC

Clone NameMSMg01-057P14
Chromosome2 (Build37)
Map Location 146,581,572 - 146,729,820
singlet/doubletdoublet
Overlap geneGm114
Upstream geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P14.T7 (MSMg01no057_p14.b1)MSMg01-057P14.TJ (MSMg01no057_p14.g1)
ACCAG284999AG285000
length780713
length of high quality
(start - end)
337 (139 - 475)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no057_p14.b1 PHD_FILE: MSMg01no057_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:06 2005CHROMAT_FILE: MSMg01no057_p14.g1 PHD_FILE: MSMg01no057_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,729,484 - 146,729,820)(146,581,572 - 146,581,862)
sequence
TTTTTNNTTTTTTTTTTTTTTNNNNTTTTTCTTTTTNTTTCTTCTCTNCC
NCCAACAAAACNCACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCCAAAAATCCGCGGAATTCCAAGCTATTTGCCACACTACTGAGAAACC
TTGTCTCAAAACACCAAAAACAAAACACAACACAACACAACACCCCAAAA
CTAAAACAAAACAAAGCCTCCTCCCAACTGTCAAGCACACTGTCAACATC
AAAAAGATTACACACCAGTATTAGGTGGAACTTATGCAAGGATTAAACAT
ACATCAACATACAACAATCGAGCAATGGGGCGAAGAACCTGGGGGCAACA
GCTCAATGAGTAAACTGTCTGACAAGCCTAAGGACTTGGGTCCTATCCCC
AGCACTGGCAATAAAAAGCACTTGCCATCACAGTGCTGGCACAGCATTCT
ACCACTGCCACCCTAGTCCAAGATATCAGTCTCTCCCCCTGGATCACAGG
ACTCGCTGCTTGTACCCTTTTCTTCAGTTTCTAACACAGTAGTAAGTTGC
GGATTTGGTTTAATGCTACACATATTAAGCTAATTTGGTTCCCCAAATGC
ATGAGAATCCACACATAACAAACTGATGGCTGTTGAGATGCCTCATTGGA
TAAGAGCACTGAATGCTCTTCTGCACGTCCTAAGTTCAAATTCCAGCAAC
CACAACCATCTGTAATGAGATCTGACGCCCTCTTCTGGAGTGTCTAAAGA
CAGTTTCAGTGTACTTACATATTAATAAAT
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGTTAGCTAGATTAAATAAAATGTTGTT
TCTTGCAGTTAACACCTGTGTGTTGCTTTTAGCATTTTTTTATAGAGAGT
CTAAAAAGCAACAATGCTGTATCATTAGACACTGCCCTAAGTACTTATTA
ATCATTGTTGCCAGTCAGAGCATTTAGAGCAACCTGGAGACACACATCTT
TGAGGGCATTTCCAGAGAGGTTTAACTGAGGAGATAAGATCCACCCGGGC
TGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCA
GGCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG
ATAGCCAGAGCTACACAGAGTAATCCTGTCTTGAATAGAACAAAAAAAAA
TAAAGGAAGGATCGATCGAAGGAACGATCGAAGGAAGGAAGGAACGAAGG
AAGGAAGGTAAAACGAAAAGTTCATTCTCTTCTTCACCCTCTCCTATTCT
CTTCTCTACTACTCCACTGACTTTTGTCTTTCCCCTCTTCTCCCCTCTTT
CTCCATATTCTCCCCTCTTCTCTTATTCCTCCTGCTCCTGTCTCATCAAA
CTCTCTTTCTACTCCAATGCTTCTCTCCTCTCTTACTCCCCTCTTTCTCT
TTACTCTACTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p14.b1 MSMg01no057_p14.b1 CHROMAT_FILE:
MSMg01no057_p14.b1 PHD_FILE: MSMg01no057_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:06 2005
         (337 letters)



>mm_chr2_146729345_146730081
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgagaaaccttgtctcaaaacaccaaaaacaaaacacaacacaacacaacaccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tactgagaaaccttgtctcaaaacaccaaaaacaaaacacaacacaacacaacaccccaa 417

                                                                       
Query: 61  aactaaaacaaaacaaagcctcctcccaactgtcaagcacactgtcaacatcaaaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aactaaaacaaaacaaagcctcctcccaactgtcaagcacactgtcaacatcaaaaagat 357

                                                                       
Query: 121 tacacaccagtattaggtggaacttatgcaaggattaaacatacatcaacatacaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tacacaccagtattaggtggaacttatgcaaggattaaacatacatcaacatacaacaat 297

                                                                       
Query: 181 cgagcaatggggcgaagaacctgggggcaacagctcaatgagtaaactgtctgacaagcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cgagcaatggggcgaagaagctgggggcaacagctcaatgagtaaactgtctgacaagcc 237

                                                                       
Query: 241 taaggacttgggtcctatccccagcactggcaataaaaagcacttgccatcacagtgctg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 236 taaggacttgggtcctatccccagcactggtaataaaaagcacttgccatcacagtgctg 177

                                                
Query: 301 gcacagcattctaccactgccaccctagtccaagata 337
           | |||||||||||||||||||||||||||||||||||
Sbjct: 176 ggacagcattctaccactgccaccctagtccaagata 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no057_p14.g1 MSMg01no057_p14.g1 CHROMAT_FILE:
MSMg01no057_p14.g1 PHD_FILE: MSMg01no057_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:06 2005
         (291 letters)



>mm_chr2_146581372_146582062
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagctagattaaataaaatgttgtttcttgcagttaacacctgtgtgttgcttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttagctagattaaataaaatgttgtttcttgcagttaacacctgtgtgttgcttttag 260

                                                                       
Query: 61  catttttttatagagagtctaaaaagcaacaatgctgtatcattagacactgccctaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttttatagagagtctaaaaagcaacaatgctgtatcattagacactgccctaagt 320

                                                                       
Query: 121 acttattaatcattgttgccagtcagagcatttagagcaacctggagacacacatctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttattaatcattgttgccagtcagagcatttagagcaacctggagacacacatctttg 380

                                                                       
Query: 181 agggcatttccagagaggtttaactgaggagataagatccacccgggctgggcgtggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcatttccagagaggtttaactgaggagataagatccacccgggctgggcgtggtgg 440

                                                              
Query: 241 cgcatgcctttaatcccagcactctggaggcagaggcaggcaaatttctga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgcatgcctttaatcccagcactctggaggcagaggcaggcaaatttctga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)