BAC Information

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BAC

Clone NameMSMg01-058E08
Chromosome2 (Build37)
Map Location 117,440,003 - 117,440,240
singlet/doubletsinglet
Overlap genenone
Upstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058E08.T7 (MSMg01no058_e08.b1)MSMg01-058E08.TJ (MSMg01no058_e08.g1)
ACCAG285226AG285227
length702722
length of high quality
(start - end)
243 (78 - 320)84 (127 - 210)
definitionCHROMAT_FILE: MSMg01no058_e08.b1 PHD_FILE: MSMg01no058_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:29 2005CHROMAT_FILE: MSMg01no058_e08.g1 PHD_FILE: MSMg01no058_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAGAGAGACC
GCGGAATTCTCTTGTTCTNAAAGCGGATTTCCAATACTGCCATTTGTACA
GTGGTGTGTGTGTGTGTGTGTTTGCGTATATATATCATATATAATTAATT
CATAGACTAGAGTACTTATATGTCATTAACTATATGGTCAGTTATTGCTT
TGTAGAAAGCTCTGCTAGGGTCCTAATAGTGAAAATCAGCATTAAAAATA
GGAGTAGAAAGACTTAGGGATTGGTGCCTTTAATTCCAGCACTCAGGAGA
CTGAGGCAGGAGGATCTGATTTTTAAGTCAGTCCAAGCTACTGGCTAAGG
CTTTGTATTGAAAAGAAATCAACAAAGAGAAGCCAATAGAAACAAAAGGC
CACTTGTCACAGTGTTTTGTTGCTGAATATCATTTATAAGTAGCTTGTAG
CTGGCACAAAGGAGGCCACAGGCTTTTAGAACTGATAGTTATGAAAGTGC
ACACTGGAAGGTGATCTTGTGTGCGAGTGGCGCCAGGGAGTGAGATGTCA
TGATGTGTGTAGAAGAAACCATGCGTAAAACCAACGACCAATTCTCCATG
GAAATGGTTGTGCACCATGTTCCACGGGAAACCACTGTCCCCGAGCATCC
TTCAATTGTGACACACATGACTCAAATTGCAAGGTACACACGCAAATCTC
TC
CCAATACACAGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTTCCAAAAAAATCTGCCCTGAAGACATGGGCTCTGACC
CTCACAGCGAGCCTGATTTTCCCAGACTAAATATGTGCTATGCATTCCTG
TTCCCAGAATTCCTGGGCTTTCTTCCTGCTCCAAAACCAACATACAGTGA
CTGTATACAAATGGGCTTTTAGAAATGCATATATTTTACATCATGTTTAT
ATTCAATAATTTAAATGTCCGGAAAACATTTCTTTTTATAAAAATTAACA
TAAATAAAATATTTGGTGCCTTGAATCATGGGGTTTGTCCACACCCTTTG
AGACTGCTCAAATAGTCGCCTCCCTTTCTGGGGTATCTTGAGAGGAAGCT
AACAGACTGTCTGTCTCTCGCATGTATTTGTAAGGTCTTCTAGCATTTGT
ATTTAAAGTATGCCCTTTTGGAACACATTTTCTTTTCTCATTTGCATGTC
AATAATGCGATCATGACCTTGTAAATTTCCCACTGGCTGCTCTTTTCAAA
TATCAGCGTTGCTATGCCGCTCCATGTTATTGAGCCCCCTTTGCACCCTC
CTTTAAGCACTTCCAATCCTAATTATCCCCGTATGCCTCGGATAGTGCTT
TGTAACAACATCCCTAGTCCTATATTGTACCACAACTTTTACCAGTTTTT
ACACACAAAACTACATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_e08.b1 MSMg01no058_e08.b1 CHROMAT_FILE:
MSMg01no058_e08.b1 PHD_FILE: MSMg01no058_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:29 2005
         (243 letters)



>mm_chr2_117439848_117440486
          Length = 639

 Score =  426 bits (220), Expect = e-124
 Identities = 235/242 (97%), Gaps = 4/242 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccaatactgccatttgtacagtggtgtgtgtgtgtgtgtgtttgcgtatatatatca 60
           ||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||
Sbjct: 393 tttccaatactgccatttgtacagtg----gtgtgtgtgtgtgtttgtgtatatatatca 338

                                                                       
Query: 61  tatataattaattcatagactagagtacttatatgtcattaactatatggtcagttattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatataattaattcatagactagagtacttatatgtcattaactatatggtcagttattg 278

                                                                       
Query: 121 ctttgtagaaagctctgctagggtcctaatagtgaaaatcagcattaaaaataggagtag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctttgtagaaagccctgctagggtcctaatagtgaaaatcagcattaaaaataggagtag 218

                                                                       
Query: 181 aaagacttagggattggtgcctttaattccagcactcaggagactgaggcaggaggatct 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaagacctagggattggtgcctttaattccagcactcaggagactgaggcaggaggatct 158

             
Query: 241 ga 242
           ||
Sbjct: 157 ga 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 639
Length adjustment: 9
Effective length of query: 234
Effective length of database: 630
Effective search space:   147420
Effective search space used:   147420
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)