BAC Information

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BAC

Clone NameMSMg01-058L03
Chromosome2 (Build37)
Map Location 39,032,847 - 39,033,199
singlet/doubletsinglet
Overlap geneA930041I02Rik
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, LOC100042584
Downstream genePpp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058L03.T7 (MSMg01no058_l03.b1)MSMg01-058L03.TJ (MSMg01no058_l03.g1)
ACCAG285549AG285550
length737704
length of high quality
(start - end)
170 (131 - 300)367 (78 - 444)
definitionCHROMAT_FILE: MSMg01no058_l03.b1 PHD_FILE: MSMg01no058_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:00 2005CHROMAT_FILE: MSMg01no058_l03.g1 PHD_FILE: MSMg01no058_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGAGGATCCG
CGGAATTCTATCATATTCCCAAAGAACACCTAAAACCAATACTCTTCAAA
CTATTTCACAAAATACAAACTTAAACCACACTACCCAATTCATTCTATGA
AGCCACAGTTATACTGCGTATTCTCCCTTGGAGATGGAACAGTTTCTGTC
TAATCAGGAACTTGTCACAATTACCTTTCATAGAGGACTTCATAAGGGAT
TTTCTTCTACTTCTATGATGTTTAATATTCTAAATAGATTTTTTTAAATT
GGTTAACTGCATATCACTTTTAGCTTCTTAAGATATCATGTATTTTTAAC
AGGCATCCAACTTTTTTTTTTTCCCCCCCCCCCCCTAAAAAAGTATGAAA
GGATGAATGAATATTCAAATAACAAAAAAAAAAAAAAACCCCCCCTGGGC
AGGGAATGAATCTGTTTTTGTCTTTCCCTGCTAAGCCCCTACTGATACAT
GTCATCTATCGTCTTGACAATGGACCTACTGATTATTTTACAGTACAGTA
AATTCCCGTTTTATTTGTTTAATTGCATAATTATCTTATCTCCTGTACCT
CGCCATTTTTAAATTTACAATCACGCGCCTCTGGTTAATTGATGAATCTT
TCATTCTTAGTTTCTCTTTGCCTGATGCCACTTCACATTATCCTCCTTTG
CCCCATCTCACTATTCTTTCATTTAACATTTTTTCTG
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATATAACACTGTCTGAGAA
ATCTGCGATCAGCAGTCAGCAAACTACAGACCTGAAAGAGCCAATGGGTA
TGGCACTAATCCAATCTGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAATGGAGAGCTGATGGGCTGATGGGGTAATAATCTAAGGGCCAAAAACA
GGCTTAAAAGCCAAGGTTTTGGACTGAATCCATATTCAGGATTCAGGCAG
GAGTTATACCTGACTTTAATTCTGTTTAATTCTTCAAATAATTAAATGAG
GGCATAAGTTTTACTTGATCTACTCATGCAAATGCTCACTTCAAAGGCCA
GGCATAATGTCACAATCTGGTATTCCCAATCCTTGAAAGGAAGAGACTGG
AAGGAAGATTGCCACAAGGTCAAGGACTGCCTAGTACTGATACTGAATTC
CAGGTCCTCTAGGATATACAATACTCTGTCTCAAAAAGCAAGCAAGCAAA
CAAAATAAAAAAGATTTAATCCTATCCATAATCACATACTGTAGACTGTT
TGAGCACACATCTGAGGACTTGTGGTCCTATTATGTAGACACTTAAAATT
CATTATCATCATTGACCGCCATCTTTCTTTTCATTCCATTTTTTTCCTTC
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_l03.g1 MSMg01no058_l03.g1 CHROMAT_FILE:
MSMg01no058_l03.g1 PHD_FILE: MSMg01no058_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:00 2005
         (367 letters)



>mm_chr2_39032633_39033399
          Length = 767

 Score =  598 bits (309), Expect = e-175
 Identities = 346/367 (94%), Gaps = 14/367 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatataacactgtctgagaaatctgcgatcagcagtcagcaaactacagacctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 215 actcatataacactgtctgagaaatctgcgatcagcagtcagcaaactagagacctgaaa 274

                                                                       
Query: 61  gagccaatgggtatggcactaatccaatctgaagacaaaaaaaaaaaaaaaaaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||              ||||||||||
Sbjct: 275 gagccaatgggtatggcactaatccaatctgaagac--------------aaaaaaaaaa 320

                                                                       
Query: 121 aaaaaatggagagctgatgggctgatggggtaataatctaagggccaaaaacaggcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaatggagagctgatgggctgatggggtaataatctaagggccaaaaacaggcttaa 380

                                                                       
Query: 181 aagccaaggttttggactgaatccatattcaggattcaggcaggagttatacctgacttt 240
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gagccaaggttttggactgaatccatattcaggattcaggcaggagtcatacctgacttt 440

                                                                       
Query: 241 aattctgtttaattcttcaaataattaaatgagggcataagttttacttgatctactcat 300
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aattctgtttaagtcttcaaataattaaatgagggtataagttttacttgatctactcat 500

                                                                       
Query: 301 gcaaatgctcacttcaaaggccaggcataatgtcacaatctggtattcccaatccttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 501 gcaaatgctcacttcaaaggccaggcataatgtcacaatctggtattcccactccttgag 560

                  
Query: 361 aggaaga 367
           |||||||
Sbjct: 561 aggaaga 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)