Query= MSMg01no058_m20.b1 MSMg01no058_m20.b1 CHROMAT_FILE:
MSMg01no058_m20.b1 PHD_FILE: MSMg01no058_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:09 2005
(244 letters)
>mm_chr2_33196330_33196973
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 gaatactttgtgggatcagttgtgatggcacagcgtggtgtctggtctcttcaccaacct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 gaatactttgtgggatcagttgtgatggcacagcgtggtgtctggtttcttcaccaacct 385
Query: 61 tcatctcatttggatttataaattctggggcttgtgagggccaggcacattctgggatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcatctcatttggatttataaattctggggcttgtgagggccaggcacattctgggatgg 325
Query: 121 atgcacaggtgggacccagtgatctgccaggggcaggatggttgggcatagttgcgagtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 atgcacaggtgggacccagtgatctgccaggggcaggatggttgggcatagttgtgagtg 265
Query: 181 agtgctaccagaagggctatggaagcagaatccatacagctgtgggacagcagtatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgctaccagaagggctatggaagcagaatccatacagctgtgggacagcagtatttgt 205
Query: 241 ctac 244
||||
Sbjct: 204 ctac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_m20.g1 MSMg01no058_m20.g1 CHROMAT_FILE:
MSMg01no058_m20.g1 PHD_FILE: MSMg01no058_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:09 2005
(269 letters)
>mm_chr2_33021666_33022334
Length = 669
Score = 445 bits (230), Expect = e-129
Identities = 259/274 (94%), Gaps = 10/274 (3%)
Strand = Plus / Plus
Query: 1 cagacctgtctctcaggggctttactttgttggagaacacccacatagggcaagtgagta 60
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 201 cagacctgtctctcaggggctttactttgttggagaagacagacatagggcaagtgagta 260
Query: 61 tgcagatgactgcaggttaggccatgcaggctactgccacacaaggtcattgtatgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagatgactgcaggttaggccatgcaggctactgccacacaaggtcattgtatgatgt 320
Query: 121 agggctacatcatgtagtcctgtgagaggctgggcaggaagcaaacccagctttgtaggc 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 321 agggctacatcatgtagtcctgtgagaggctgggcaggaagtaaacccagctttgtagac 380
Query: 181 catgggggccacatcccccaaaaaatcaactccacagctgctcacacaggcaaatatttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgggggccacatcccccaaaaaatcaactccacagctgctcacacaggcaaatat--- 437
Query: 241 tt-----catgtggccagatgtcatcctatacag 269
|||||||||||||||||||||||||||
Sbjct: 438 --aggaacatgtggccagatgtcatcctatacag 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
