Query= MSMg01no059_d03.b1 MSMg01no059_d03.b1 CHROMAT_FILE:
MSMg01no059_d03.b1 PHD_FILE: MSMg01no059_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:38 2005
(586 letters)
>mm_chr2_9519121_9520107
Length = 987
Score = 1035 bits (535), Expect = 0.0
Identities = 574/587 (97%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 1 cagatgaaatagaaatgcaagatacaaaaggggaggaagccatacatcatcacttgaagt 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 787 cagatgaaaaagaaatgcaagatacaaaagaggaggaagccatacatcatcacttgaagt 728
Query: 61 a-acatatgtcaggtggccttagctcggagttccaccatgctgtatgctgtagccaggaa 119
| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct: 727 agacatatgtcaggtggccttagctgggagttctatcatgctgtatgctgtagccaggaa 668
Query: 120 tactgccagcgcttggatttggaaatcggctgtcttgaatggctggtggacacattggct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tactgccagcgcttggatttggaaatcggctgtcttgaatggctggtggacacattggct 608
Query: 180 ttgcttatgtaaatctttgttttcctccggctaccaggaacctgacattttcccactctc 239
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 607 ttgcttatataaatctttgttttcctccagctaccaggaacctgacattttcccactctc 548
Query: 240 tatacttctgtatccattgtcctgcactgccaggttccgctgagtggttggcaagttggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatacttctgtatccattgtcctgcactgccaggttccgctgagtggttggcaagttggc 488
Query: 300 ggtgtgggtgaaagagtgtcattgaccatctgacttgttcttttttccccatgccttctg 359
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 ggtgtgagtgaaagagtgtcattgaccatctgacttgttcttttctccccatgccttctg 428
Query: 360 cattgaattcaagccttttttttcctggccaactctgcgcaaggctaatacctccaggaa 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 cattgaattcaagcctttttttccctggccaactctgcgcaaggctaatacctccaggaa 368
Query: 420 gtcagtgaagcaaacttggcctagttgggtggactggacttagtggtgagtcaggaaaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcagtgaagcaaacttggcctagttgggtggactggacttagtggtgagtcaggaaaat 308
Query: 480 tctagtgcggatgagagtcacaggggttggcaggaggcagagttccttggtagcaattcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tctagtgcggatgagagtcacaggggttggcaggaggcagagttccttggtagcaattcc 248
Query: 540 agctcctctgaaagcttgctgtgcgactttttgggtaagtcataacc 586
||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 agctcttctgaaagcttgctgtgtgactttttgggtaagtcataacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d03.g1 MSMg01no059_d03.g1 CHROMAT_FILE:
MSMg01no059_d03.g1 PHD_FILE: MSMg01no059_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:38 2005
(525 letters)
>mm_chr2_9447498_9448421
Length = 924
Score = 866 bits (448), Expect = 0.0
Identities = 506/526 (96%), Gaps = 3/526 (0%)
Strand = Plus / Plus
Query: 1 tactcatggagtaaatgagatgaaaccatctggttggcttggcagctctgtttctctagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 201 tactcatggagtaaatgagatgaaaccatctggttggcttggcagctctgtttctccact 260
Query: 61 tggaaccagagaagagtctaaattagtcacccaatgtgaatgcatctactctttgtgaga 120
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 261 tggaaccagagaagagtctaaattagtcacccactgagaatgcatctactctttgtgaga 320
Query: 121 gctcatgagtatgcatggacaatgaaaaaagaaaactggggctagaagatgagaaatacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gctcatgagtatgcatggacaatgaaaaaagaaaactggggctagaagatgagaactacc 380
Query: 181 aattctaccagtggtagaagaggagccagagaggagatcaagtacatctggagacacgca 240
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 381 aattctaccaatggtagaagaggagcccgagaggagatcaagcacatctggagacacaca 440
Query: 241 cacacacacttggaagcggggaaaaggagttccagagtaaatggacaggaaataagaaaa 300
|||||||| | |||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 441 cacacaca--tagaagtggggaaaaggaattccagagtaaatggataggaaataagaaaa 498
Query: 301 gaaatgggtgtaaatattatcaaaatgtggtataagcatgtataaaattgtcaataaaat 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 gaaatgggtgtaaatattatcaaaatgtggtgtaagcatgtataaaattgtcaataaaat 558
Query: 361 aaa-ttttaaaaggaagaaaaatcactgcttaaagcagaaatttgcacaaacaacgtctt 419
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 559 aaaattttaaaaggaagaaaaatcactgcttaaagcagaaacttgcacaaacaatgtctt 618
Query: 420 tgttaatcttttgacatgcacttatttattgtatacataagtgtatgtgggggtatgtgc 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 tgttaatcttttgacatgcacttatttattgtatacatatgtgtatgtgggggtatgtgc 678
Query: 480 atgtatgacggcatgcacatgacagtcagaggacaactttcaggtg 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgtatgacggcatgcacatgacagtcagaggacaactttcaggtg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
