NATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCGCGGA
ATTCTTGGTTTATTCTATACCCCATTTTTGATTGGGTTGTTTGGTTTTTT
GGTGATTAACTTCTTTATATATTTTGAATATCAGCTCTCTATCAGATGTG
GGGTTAGTGAAGATTTTTTTTCCCACTCTGTAGGTTGCTGATTTGTATAA
TCTACTATATCCTTTGCCTTGCAGAAGGTTTCCAGTTTCATGAAGTCCCA
TTTTGGGAGGCATTGGGCTATGCAAAGACAGTCTGGTCTCCAGTTGAGCT
GAGGTCTGAACCCTGGGACCTGTTGTTGATAATTTACCTACATGGCACAG
TAGTAGTTCCCTCATGTCTCCTGGAACTCTGGCTCCTGTCGAAGTTATCA
CCCCCCACAGCACCCACAGGAGAAGCATAGCTAGTAGTCACATAGACAAT
GTCCCAAGCTTTTGACCTTCAGGCTAAACTCCTCCCAGTTACCTAGCAAC
AGTAAAGATAACAGCTCACCATAAGAGGGGCTGCTTGGCCCCACCTCACT
CTCTTACTCCTCTTCTGTCTCTTCTCTCCTCTCCTCTCCTCTCCTCTCCT
CTCCTCTCCTCTCTTCTCCTCTCCTCCTCTCCTCTCCTCTCCTTCTCCCC
CCCCTTCTCTTCTCTTCTCCCCTCTTCTCTTCTTCCTATCTCTTTACCTA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATAGGACCATCATTAAGAATTAA
AAACACCCCAGGTGCCAGAACCCTTTGATCTTTTCCTAGTTTCCAATGTC
CAGTTGCTGGGTAGAGTTTACTGCTTGGCAGACTAGATACATGAAAACAT
ATCTTGAAGAGGTAAGTGTAAGGAAGGGATGACATAGTTTTTCAATAGGA
GCACTAACATTTTGTCATGGCCAAGGTGTATAAATTCATGAAGTTGCTTT
ATTAGAATCCAAAGTAGAGGATGGGGTATAATAATCCTGTTAACTGTGGT
GACCTTCTAGCTCTCTTCAGTAGAAGTGTTAGAGAGTCTTTGGAAGAACT
GGTTATCTTCCTCTGAATTGGTTGGTTTTTCAGGCAATGTTGAGGTTCGG
AAAGCCAAAAGTTCCATTATCTGTTCTGCTCTAGCTGCCTCCTTGGCTGC
CAGGTCTTCTCTCCTATTGCTTTCAGGTTCCTCCATTTCTTGGAATTCCC
TTTTTTGTTGTCTGGGTCATATGTCACAGAAACCATTTTCCAGTCTCATA
GGGCAAAGAGAACTCTTAGGATCTCTAACTTGTTCCTCATTGATTTTCCT
TATGCCCTACAGAGGGCTCTCTTGCTGTATTTGTCCCTGTGGGGGAAAGG
TAAG

Query= MSMg01no059_f03.g1 MSMg01no059_f03.g1 CHROMAT_FILE:
MSMg01no059_f03.g1 PHD_FILE: MSMg01no059_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:48 2005
         (532 letters)



>mm_chr2_42681329_42682260
          Length = 932

 Score =  948 bits (490), Expect = 0.0
 Identities = 525/544 (96%), Gaps = 12/544 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataggaccatcattaagaattaaaaacaccccaggtgccagaaccctttgatcttttc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 ttataggaccatcattaagaattaaaaacatcccaggtgccagaaccctttgatcttttc 567

                                                                       
Query: 61  ctagtttccaatgtccagttgctgggtagagtttactgcttggcagactagatacatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctagtttccaatgtccagttgctgggtagagtttactgcttggcagactagatacatgaa 507

                                                                       
Query: 121 aacatatcttgaagaggtaagtgtaaggaagggatgacatagtttttcaataggagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aacatatcttgaagaggtaagtgtaaggaagggatgacatagtttttcaataggagcact 447

                                                                       
Query: 181 aacattttgtcatggccaaggtgtataaattcatgaagttgctttattagaatccaaagt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aacattttgtcatggccgaggtgtataaattcatgaagttgctttattagaatccaaagt 387

                                                                       
Query: 241 agaggatggggtataataatcctgttaactgtggtgaccttctagctctcttcagtagaa 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaggatggggcagaataatcctgttaactgtggtgaccttctagctctcttcagtagaa 327

                                                                       
Query: 301 gtgttagagagtctttggaagaactggttatcttcctctgaattggttggtttttcaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgttagagagtctttggaagaactggttatcttcctctgaattggttggtttttcaggc 267

                                                                       
Query: 361 aatgttgaggttcggaaagccaaaagttccattatctgttctgctctagctgcctccttg 420
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 aatgttgaggttgggaaagccaaaagttccattatctgttctgctctagctgcctcgttg 207

                                                                       
Query: 421 gctgcc------------aggtcttctctcctattgctttcaggttcctccatttcttgg 468
           ||||||            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gctgcctccttggattccaggtcttctctcctattgctttcaggttcctccatttcttgg 147

                                                                       
Query: 469 aattcccttttttgttgtctgggtcatatgtcacagaaaccattttccagtctcataggg 528
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 146 aattcccttttttgttgtctgggtcatatgtcacagaaaccattttccagtcccataggg 87

               
Query: 529 caaa 532
           ||||
Sbjct: 86  caaa 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)