BAC Information

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BAC

Clone NameMSMg01-059H12
Chromosome2 (Build37)
Map Location 121,207,435 - 121,207,786
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc
Downstream geneCatsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H12.T7 (MSMg01no059_h12.b1)MSMg01-059H12.TJ (MSMg01no059_h12.g1)
ACCAG286139AG286140
length694690
length of high quality
(start - end)
---363 (117 - 479)
definitionCHROMAT_FILE: MSMg01no059_h12.b1 PHD_FILE: MSMg01no059_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:59 2005CHROMAT_FILE: MSMg01no059_h12.g1 PHD_FILE: MSMg01no059_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCCGTTATATAACAGAGAATCCGGGTTATTCACTGCATGCAAGGGT
TTAACATGTGCTTTGACTTTGTAACAAAAAGATCCAATACACATACGTAA
CGTTTCTCCTCAACAGCAATCTGAGACTCAAACAGCTCTCAAACACTAAG
TGTTTAAAAAGTAAGGACAAACTGAATGAGAAGACACAAGGTATAATGAA
TAAAGAGGACATTCACAGGTCCGAGACATACAAAAAATTACCTCATTTTA
CATACCATGAAGAGCATGCACATTTTTATTTAAGCACAAAAACACTACTG
AAACCCTTTCCCCTAGCGAATCCATTCTGTCCTATATTGTTAAGTGACAA
TAAAACACTAGATAGGGGACGCCGCAAACACTTGGTTCTCGTGCATCACA
TTTATAAACCGGTTGGCACAGATTTTCTAGTGAAACCTTTGGTTACCACC
ATATTACCGCCAATGGGCAAAGACATGTACTTTCTTTAAACAGTTCCTCT
AAGTTCTCCCTCCAACATTCCTAAAGCCTGGATTCCAACTTTTAGCTTTT
GCAACAGCTCCGGCTTACTTACTTGCAAAGATTCTCCTGAACAAGCGTTT
TCGAACCAAAATCTGCCGGAATTGCAGGTTGGTAACACGCGTGA
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACCGCATGCAGGGCTACCTGGGGAGA
CCCTATCTCAATGATACGATGATGATGGATGACTTGACTGAATGGATATC
TGTGCACCATGTGCATACCTGGTTCCCTCAGAGACCAGAAGAGGAGGTCA
GATGCCCTGAACTGGAATTAGAGATGGTTGTGAGCAGCCATATGAATGCT
GGGAATCAAACCCAGGTCCTCTGGGTTTGGAAGAGCAGCAGTCACTGTTC
TAATCTGCTGAGCCATCCCTCTAGACCTGCTCATAAGGTTTTTTTATGCA
AGAAGAGATGACCAGTCTCTGGACAGACCAGCTTATATTGAATGAAATCT
TTCTAACCCATGAATAGGATTCCATGTGTAGAGAGTTTTAACTTGAGAAA
GAAAAAGAAACTGCAATGCTTACATGGCCTAATCAAGTAACAGCTCTCTG
AGTCTCTCTCCTTACCTGTTATTTGAAGGGTTTACCTATGTGGTTTGTGA
AGTCCTGTCTACTCCTTAATATTGCTGGATTCCAAGGTTTTTTTTTATGT
GTGTATGTGCGTTGGATCTGCGTAGTCATGCTTTGTTATATTGCTTATGC
CTTCGAGTCGTTTTTCTCTGATCTTCCTGTATTTGGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h12.g1 MSMg01no059_h12.g1 CHROMAT_FILE:
MSMg01no059_h12.g1 PHD_FILE: MSMg01no059_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:59 2005
         (363 letters)



>mm_chr2_121207024_121207786
          Length = 763

 Score =  673 bits (348), Expect = 0.0
 Identities = 351/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  gatgacttgactgaatggatatctgtgcaccatgtgcatacctggttccctcagagacca 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gatgacttgactgaatggatatctgtgcaccatgtgcatacctggttccctcagagacca 704

                                                                       
Query: 72  gaagaggaggtcagatgccctgaactggaattagagatggttgtgagcagccatatgaat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaagaggaggtcagatgccctgaactggaattagagatggttgtgagcagccatatgaat 644

                                                                       
Query: 132 gctgggaatcaaacccaggtcctctgggtttggaagagcagcagtcactgttctaatctg 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gctgggaatcaaacccaggtcctctgggtttggaagagcagcagtcactgttctaatctg 584

                                                                       
Query: 192 ctgagccatccctctagacctgctcataaggtttttttatgcaagaagagatgaccagtc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgagccatccctctagacctgctcataaggtttttttatgcaagaagagatgaccagtc 524

                                                                       
Query: 252 tctggacagaccagcttatattgaatgaaatctttctaacccatgaataggattccatgt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctggacagaccagcttatattgaatgaaatctttctaacccatgaataggattccatgt 464

                                                               
Query: 312 gtagagagttttaacttgagaaagaaaaagaaactgcaatgcttacatggcc 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 463 gtagagagttttaacttgagaaagaaaaagaaactgcaatgtttacatggcc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)