BAC Information

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BAC

Clone NameMSMg01-059J21
Chromosome2 (Build37)
Map Location 109,015,571 - 109,015,892
singlet/doubletsinglet
Overlap geneMett5d1
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J21.T7 (MSMg01no059_j21.b1)MSMg01-059J21.TJ (MSMg01no059_j21.g1)
ACCAG286253AG286254
length707708
length of high quality
(start - end)
564 (42 - 605)322 (69 - 390)
definitionCHROMAT_FILE: MSMg01no059_j21.b1 PHD_FILE: MSMg01no059_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:10 2005CHROMAT_FILE: MSMg01no059_j21.g1 PHD_FILE: MSMg01no059_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGACTCCTATATTCCGAGAATCCGCGGAATTC
TCTGTTTATCTCTGTTTCCCATTTTTAATAGGGTTATTTGGTTCTCTGGA
ATCTAACTTCTTGAGTTATTCGTATATATTGAAAACTAACCGTCTATCAA
GGGCTTGGTAAAGATCTTTTCCCAATCTGTTGATTGCCCTTTTGTTCTAT
TGACTGTGCTTTGCCTTACGAAAGCTTTGGAATTTTATGGGGTCCCATTT
GTCAATTCTTGATCTTAAAGCATAAGCCATTGGTGTTCTGTTCAGGGAAT
TTTTTCCCTGTGCCCATTTGTCTTAGGCTTTTCTCCACTTTATTGTCTAT
TAAATTTAGTGTACCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACT
TGAGCTTTGTATAACGAGATGAGAATGGACCAATTTGCATTCTTCTACAT
GTTGACTGCCAGTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTT
CCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGATGATAGGTGT
GTGGGTGCACTTCTAGGTCTTCAACTCAATTCTATTGATCTACTTGACTG
CAACTGTACCAATGTCATGTCGTTTTTATCACTATTTTTCTGTAGTAGAC
CTTGAGGTTAGTGATGCTGATTTCCCAGAAGTTTTTTCTCTCCTTTTTCT
TTCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGTACTTCTTCCCTCCTGAACCATATAACCA
AACTATTTACTGGTTCCTTTCTTCTCTTCTGATAATACTTGTTATTTGGG
CTCATTCTACAGATCTCATTCTGTCAGTAATCCTTCCTAATCCTCAGCAT
AAAAATCTATCTGAACATCGATGTTTCTCATCCCCAATCCCAGCACTTCC
AGTAATAGGTATCTCTGCATTCTTTTATCTCCTACTTATTTTTAGTTGTT
ATGGTCTACCTAAGATACTGACTTCCTGTGTTGAGCTACGTATTGTCCAG
ACATACTGTAGAGTAAAAAATGTGCTTTTCTAAAAGGTGATATTTTAATT
AAATTTTGTTTTTGCATACACATATGAATAATTAAGAATATCAGGTTAGA
AGTTTTTATATTAAAAATAATATGCAAAATATTTATAAAAACTCGACCAT
TTTATTGGACCATCATATGACTATATGGGATGTAGAATTAATATTCCCCT
TCTAGTTTAAAGTGAGGAAGACCCATACTCATTCATCAAACTTTTTTTTT
CTGTTGGAATTAAAATCATAAATTGCGGACTGAAAAATGCCTCTAAATGA
TATTATTTTTTCCATGCAGACCCAAGACCTTGAGCTTGATCTGGAGCACG
GTGGACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j21.g1 MSMg01no059_j21.g1 CHROMAT_FILE:
MSMg01no059_j21.g1 PHD_FILE: MSMg01no059_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:10 2005
         (322 letters)



>mm_chr2_109015371_109016092
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtacttcttccctcctgaaccatataaccaaactatttactggttcctttcttctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttgtacttcttccctcctgaaccatataaccaaactatttactggttcctttcttctctt 463

                                                                       
Query: 61  ctgataatacttgttatttgggctcattctacagatctcattctgtcagtaatccttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctgataatacttgttatttgggctcattctacagatctcattctgtcagtaatccttcct 403

                                                                       
Query: 121 aatcctcagcataaaaatctatctgaacatcgatgtttctcatccccaatcccagcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatcctcagcataaaaatctatctgaacatcgatgtttctcatccccaatcccagcactt 343

                                                                       
Query: 181 ccagtaataggtatctctgcattcttttatctcctacttatttttagttgttatggtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccagtaataggtatctctgcattcttttatctcctacttatttttagttgttatggtcta 283

                                                                       
Query: 241 cctaagatactgacttcctgtgttgagctacgtattgtccagacatactgtagagtaaaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 cctaagatacagacttcctgtgttgagctacgtattgtccagacatactgtagggtaaaa 223

                                 
Query: 301 aatgtgcttttctaaaaggtga 322
           ||||||||||||||||||||||
Sbjct: 222 aatgtgcttttctaaaaggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)