BAC Information

Click to search

BAC

Clone NameMSMg01-059O11
Chromosome2 (Build37)
Map Location 76,729,062 - 76,876,181
singlet/doubletdoublet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993, LOC667920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059O11.T7 (MSMg01no059_o11.b1)MSMg01-059O11.TJ (MSMg01no059_o11.g1)
ACCAG286473AG286474
length714715
length of high quality
(start - end)
658 (50 - 707)637 (79 - 715)
definitionCHROMAT_FILE: MSMg01no059_o11.b1 PHD_FILE: MSMg01no059_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:31 2005CHROMAT_FILE: MSMg01no059_o11.g1 PHD_FILE: MSMg01no059_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,875,528 - 76,876,181)(76,729,062 - 76,729,694)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAGTTTATCCCCCATCTGTGTAATCTACGTCCACCAGGTA
TGAAGAATCATTAGCTCACGGGTTAAAGAATGGGTAATGGAGCTTTAATG
ATGTTCTTCACTGGAGATCCCACCCTTCCTGCAGGTCACAGGCAGGTGCA
AGAGGGAGCATGCTGGAAAGAGAGTGAGAGGTCAGGAGAAGCTGCTAGGA
TCCGGTTCAAGAGGAGGGACCATGGAGAAAGTGCTGGCATGGCTTTTACT
ATAGCAGTGTGCTACAACGCTGCATGCTTTCCACTCTTCTTCTGGTCCGC
ATTCTGGTGAAACCACAGTGTATTCTGCCCTCTACACAGGGGTGCAGCCT
CTTCTGCTTCCCTATGCTACAGCCTACACTTCTGTGAGCTCTGTTTAGTT
TTGATTCGAGAATCATCCAGCGCGTCTTGGTTCTCCCGGGGCTATGAAAG
ATTCATGGCCATTTTCAAAAAAGATCTTTTTCTAAATTTTCTTAGTTCTT
TCCTTCCCTTTCATCTTCTTCCTTCTCTTTTTCCGTTGCTTTGCCCAAAC
ATCTCTCCCTTCGGAGATGGCGCAGCTCTGCAACTACAGAGAGAGCATCG
GTGAAGCAGGCTGCATATGTTCCCAGCCCCGCCTCTCTGGGTTTCCATGT
CCCTGAAGAGCTGT
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGCAATGTGCAGACATTAT
CTGAAAATGTTGTTTGGTACTTTGCTCCACTGACAATCTTAGTTTTCTCA
TGAAACCAGGCAATAGTGATGGGAGACGATCCAGCTACTTTACATTCTAA
GATGCAAGAGGTGCCCAGGACACCACCAGTATCCTTCAGTCTTCGTGTGA
AAGAGGGAGGGACCATTCGGTCTGCATGAGGGAAGACATATGACTTGTGG
TGACTTGAAAGGACAGAAGAGATATGAAAGAAGGAAAGTTCATAAGAGAA
ATTTGCATATGCGAGCAGATGCAAATGCCAGAACTAACCTGACACATCGA
CCACAGCTGTGCAACTGCTTTTTCCAACGTTGTTCTGAACCTGGAATGTG
TAGGTGCCTGCATCTTCCTTTTCAACTGAGAGGATTTTTAAGGAAGAGAT
TTTGTTGTAGAAGCTAAATTTGTGTTTTTGGCTGCTGGTCAAGAGCTTTC
CGTCCTTATACCATTCAACAGAGAGCTCCGGAGTGCCAGCCACCTTACAC
TCCAGGGCACACGTTTCTCCCACAGTCACCGTCATGGACCCTGCCTTCTC
TACAATGATCGTAGGCTCTGAAATATAACACGACATGCATCTTTGAAAAC
CTAGACCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_o11.b1 MSMg01no059_o11.b1 CHROMAT_FILE:
MSMg01no059_o11.b1 PHD_FILE: MSMg01no059_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:31 2005
         (658 letters)



>mm_chr2_76875324_76876381
          Length = 1058

 Score = 1187 bits (614), Expect = 0.0
 Identities = 644/654 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagtttatcccccatctgtgtaatctacgtccaccaggtatgaagaatcatta 64
           ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 858 gaattcttagtttatgccccatctgtgtaatctacgcccaccaggtatggagaatcatta 799

                                                                       
Query: 65  gctcacgggttaaagaatgggtaatggagctttaatgatgttcttcactggagatcccac 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 798 gctcacgggttaaagaatgggtaatggagctttaatgatggtcttcactggagatcccac 739

                                                                       
Query: 125 ccttcctgcaggtcacaggcaggtgcaagagggagcatgctggaaagagagtgagaggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccttcctgcaggtcacaggcaggtgcaagagggagcatgctggaaagagagtgagaggtc 679

                                                                       
Query: 185 aggagaagctgctaggatccggttcaagaggagggaccatggagaaagtgctggcatggc 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 aggagaagctgctaggatccggttcaagaggagggaccatggagaaggtgctggcatggc 619

                                                                       
Query: 245 ttttactatagcagtgtgctacaacgctgcatgctttccactcttcttctggtccgcatt 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 618 ttttactatagcagtgtgctacaacgctgcatgctctccactcttcttctggtccgcatt 559

                                                                       
Query: 305 ctggtgaaaccacagtgtattctgccctctacacaggggtgcagcctcttctgcttccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctggtgaaaccacagtgtattctgccctctacacaggggtgcagcctcttctgcttccct 499

                                                                       
Query: 365 atgctacagcctacacttctgtgagctctgtttagttttgattcgagaatcatccagcgc 424
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 498 atgctacagtttacacttctgtgagctctgtttagttttgattcgagaatcatccagcgt 439

                                                                       
Query: 425 gtcttggttctcccggggctatgaaagattcatggccattttcaaaaaagatctttttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtcttggttctcccggggctatgaaagattcatggccattttcaaaaaagatctttttct 379

                                                                       
Query: 485 aaattttcttagttctttccttccctttcatcttcttccttctctttttccgttgctttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaattttcttagttctttccttccctttcatcttcttccttctctttttccgttgctttg 319

                                                                       
Query: 545 cccaaacatctctcccttcggagatggcgcagctctgcaactacagagagagcatcggtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cccaaacatctctcccttcggagatggcgcagctctgcaactacagagagagcatcggtg 259

                                                                 
Query: 605 aagcaggctgcatatgttcccagccccgcctctctgggtttccatgtccctgaa 658
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagcaggctgcatgtgttcccagccccgcctctctgggtttccatgtccctgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no059_o11.g1 MSMg01no059_o11.g1 CHROMAT_FILE:
MSMg01no059_o11.g1 PHD_FILE: MSMg01no059_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:31 2005
         (637 letters)



>mm_chr2_76728859_76729895
          Length = 1037

 Score = 1178 bits (609), Expect = 0.0
 Identities = 627/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tgcaatgtgcagacattatctgaaaatgttgtttggtactttgctccactgacaatctta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgcaatgtgcagacattatctgaaaatgttgtttggtactttgctccactgacaatctta 263

                                                                       
Query: 64  gttttctcatgaaaccaggcaatagtgatgggagacgatccagctactttacattctaag 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 gttttctcatgaaaccaggcaatagagatgggagacgatccagctactttacattctaag 323

                                                                       
Query: 124 atgcaagaggtgcccaggacaccaccagtatccttcagtcttcgtgtgaaagagggaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgcaagaggtgcccaggacaccaccagtatccttcagtcttcgtgtgaaagagggaggg 383

                                                                       
Query: 184 accattcggtctgcatgagggaagacatatgacttgtggtgacttgaaaggacagaagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accattcggtctgcatgagggaagacatatgacttgtggtgacttgaaaggacagaagag 443

                                                                       
Query: 244 atatgaaagaaggaaagttcataagagaaatttgcatatgcgagcagatgcaaatgccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatgaaagaaggaaagttcataagagaaatttgcatatgcgagcagatgcaaatgccag 503

                                                                       
Query: 304 aactaacctgacacatcgaccacagctgtgcaactgctttttccaacgttgttctgaacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aactaacctgacacatcgaccacagctgtgcaactgctttttccaacgttgttctgaacc 563

                                                                       
Query: 364 tggaatgtgtaggtgcctgcatcttccttttcaactgagaggatttttaaggaagagatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggaatgtgtaggtgcctgcatcttccttttcaactgagaggatttttaaggaagagatt 623

                                                                       
Query: 424 ttgttgtagaagctaaatttgtgtttttggctgctggtcaagagctttccgtccttatac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgttgtagaagctaaatttgtgtttttggctgctggtcaagagctttccgtccttatac 683

                                                                       
Query: 484 cattcaacagagagctccggagtgccagccaccttacactccagggcacacgtttctccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cattcaacagagagctccggagtgccagccaccttacactccagggcacacgtttctccc 743

                                                                       
Query: 544 acagtcaccgtcatggaccctgccttctctacaatgatcgtaggctctgaaatataacac 603
           ||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||
Sbjct: 744 acagtcaccgtcatggaccctgccttctctataatgaccgcaggctctgaaataaaacac 803

                                            
Query: 604 gacatgcatctttgaaaacctagacctttcttt 636
           |||||| ||||||||||||||||||||||||||
Sbjct: 804 gacatggatctttgaaaacctagacctttcttt 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)