BAC Information

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BAC

Clone NameMSMg01-059P05
Chromosome2 (Build37)
Map Location 133,552,386 - 133,552,673
singlet/doubletsinglet
Overlap genenone
Upstream geneChgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1, Txndc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P05.T7 (MSMg01no059_p05.b1)MSMg01-059P05.TJ (MSMg01no059_p05.g1)
ACCAG286509AG286510
length698693
length of high quality
(start - end)
325 (49 - 373)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no059_p05.b1 PHD_FILE: MSMg01no059_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:34 2005CHROMAT_FILE: MSMg01no059_p05.g1 PHD_FILE: MSMg01no059_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCG
CGGAATTCTTTGTTTATCCATGAGCCCCATTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCTGTTGGTGGCCTTTTTGTCTTA
CTGACGGTGTCTTTTGCCTTAGAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTGTTGATTCTCGATCTTACAGCACAAGCCATTGTTGTTCTATTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCTTTTTTTTTACCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGCGGAGTTCCTTGATCCACTTAGA
GTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTAC
ATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTT
TTTCTACTGGATGGTTTTGCTCCCTTGTCAAAGATTAAGTGACCATAGGT
GTGTGAGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGACTACTTGCC
TGTCTCTATACCAGTATCTTGCAGTTTTTATTAAAATCGCTCTGTAGTAC
AGCTTTCTCTCTGGCCTGGCGATTTCCCCCCTACGTTCTTTTATTCCT
NTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCAGAAATTCAGAAGCATGTCACCAAGAGGGGAAGA
GGATGTTATGCAGGATCTGTTCGGTTTGGTGCATCCCTCTGCCTTGTATA
ACCAGCCTGGGAGGTCATTAAGTTTCCCCTGTCCAGAGATGATGCAGAGA
AGGAGTGGTTACCTTTTTAAGTGATTAGAAATAGATCGCTTAGAGTGGGC
ATCTTTGAAACTGTGCAACAGATAGTTGCTCTGTCTTACTGTTTAACAAC
AGTAAAACTCTTCAGAAACACTTTTTTTTAAGTCCAGTGGCTGCTAGTGG
ACTGGATGACCATTTCCAGCACACTAGCATATGTTGGAGTATAAGTAACA
TTTGTCTCTTCTTTCTAGAAGGAGATTTACTTTCCCTTACTTGATCGTAA
CAAATCCAGTCCAGCTGGTTATACTTTGGCAAGTAACACACTTGGCTGTT
GCCACTGCTTTTTTTCTACCTAAGACCAATCATTTTCTTTTCCTGCACGG
TAGAGAAAGGACCCTTTTCCTTCCTAGGGAAAACTTCAATATGCCATTAT
TTTGGCCCCATGTTTTGCTGTTATATTGGTGAAGAATAAGAATCCCTTAT
CTTTTCCGTATAGCATCCACCCATGTTAACAACAATTATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p05.g1 MSMg01no059_p05.g1 CHROMAT_FILE:
MSMg01no059_p05.g1 PHD_FILE: MSMg01no059_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:34 2005
         (288 letters)



>mm_chr2_133552186_133552873
          Length = 688

 Score =  470 bits (243), Expect = e-137
 Identities = 276/295 (93%), Gaps = 14/295 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaccaagaggggaagaggatgttatgcaggatctgttcggtttggtgcatccctct 60
           |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 201 atgtcaccgagaggggaagaggatgttatgaaggatctgtccggtttggtgcatccctct 260

                                                                       
Query: 61  gccttgtataaccagcctgggaggtcattaagtttcccctgtccagagatgatgcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttgtataaccagcctgggaggtcattaagtttcccctgtccagagatgatgcagaga 320

                                                                       
Query: 121 aggagtggttacctttttaagtgattagaaatagatcgcttagagtgggcatctttgaaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtggttacctttttaagtggttagaaatagatcgcttagagtgggcatctttgaaa 380

                                                                       
Query: 181 ctgtgcaacagatagttgctctgtcttactgtttaacaacagtaaaactcttcagaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgcaacagatagttgctctgtcttactgtttaacaacagtaaaactcttcagaaaca 440

                                                                  
Query: 241 c-------ttttttttaagtccagtggctgctagtggactggatgaccatttcca 288
           |       |       |||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccggccaat-------aagtccagtgactgctagtggactggatgaccatttcca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)