Query= MSMg01no060_f05.b1 MSMg01no060_f05.b1 CHROMAT_FILE:
MSMg01no060_f05.b1 PHD_FILE: MSMg01no060_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:02 2005
(657 letters)
>mm_chr2_97724015_97725068
Length = 1054
Score = 1135 bits (587), Expect = 0.0
Identities = 637/655 (97%), Gaps = 5/655 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttctattacttggcacaggtcctcgatatagaaacaggaagttgctaggttag 63
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctattaattggcacaggtccttgatatagaaacaggaagttgctaggttag 263
Query: 64 cattatttggaattgttatttcattccaatctagtagctgtcattttaatgaaaattaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattatttggaattgttatttcattccaatctagtagctgtcattttaatgaaaattaaa 323
Query: 124 atatatgtacatattatgcaaataaatactctggattacagcttatgccttgcatttcaa 183
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 324 atatatgtacatattatgcaaataaatactctg-attatagcttatgccttgcatttcaa 382
Query: 184 atctgttttgaaaaactggatgtaggtaaactgacaacacaaatgaatgagaaaaaataa 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 atctgttttgaaaaactggatgtaggtaaactgacaacacaaacgaatgagaaaaaataa 442
Query: 244 tatatcccaccctccggagtaaccttgtgtgacagcttatgca-tcagaatgtgtcactt 302
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 443 tatatcccaccctccggagtaaccttgtatgacagcttatgcagtcagaatgtgtcactt 502
Query: 303 gctctgggcaagttgggaatgattaatccctatggttcttaatctgatgataaataatga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctctgggcaagttgggaatgattaatccctatggttcttaatctgatgataaataatga 562
Query: 363 ctgataaacaatctaaatacatatatgttgtttctgtgcatatgtagttccactggaaat 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgataaaaaatctaaatacatatatgttgtttctgtgcatatgtagttccactggaaat 622
Query: 423 attcttccttgtgagcagaaggacaatgggcccttgaaactgaagtgcattgtgtcagtg 482
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 attcttccttgtgagcag---gacaatgggcccttgaaactgaagtgcattgtatcagtg 679
Query: 483 tgtctgaacagatcttactgaaaagcaaacattggatgatccccagaccttatgcctaat 542
||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 680 tgtctgaacagatcttattgaaaagcaaacattggatggtccccagatcttatgtctaat 739
Query: 543 tactagattctgcctgcttaagggcagcagagaacagagctcattcaaacatcacatttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tactagattctgcctgcttaagggcagcagagaacagagctcattcaaacatcacatttc 799
Query: 603 acatgaactgtcttatttcatctttttccggtggagagatggctctgtgctcagt 657
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 800 acatgaactctcttatttcatctttttcgggtggagagatggctctgtgctcagt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1054
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1044
Effective search space: 675468
Effective search space used: 675468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f05.g1 MSMg01no060_f05.g1 CHROMAT_FILE:
MSMg01no060_f05.g1 PHD_FILE: MSMg01no060_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:02 2005
(269 letters)
>mm_chr2_97909772_97910440
Length = 669
Score = 402 bits (208), Expect = e-117
Identities = 262/298 (87%), Gaps = 29/298 (9%)
Strand = Plus / Minus
Query: 1 aagtcagtaaaagtttcccaaccaccccaaaacagaaaagacaataagaaaaagaggaaa 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 aagtcagtaaaagtttcccaaccaccccaaaacagaaaagaaaataagaaaaagaggaaa 307
Query: 61 taattacataattggccaaattgtgggagcgaagctcagcggaatggcacttgcctagta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 306 taattacataattggccaaattgtgggagtgaagctcagcggaatggcacttgccaagta 247
Query: 121 tgtattaggctcttgggcaaaattttcatctgtgcttgccttcgtgcacacaa------- 173
| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tttatcaggctcttgggcaaaattttcatttgtgcttgccttcgtgcacacaaacacaca 187
Query: 174 -----------------acacacacacacacacacacacacacacacacacaccac---- 212
|||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cacacacacacacacacacacacacacacacacacacacacacacacacacaccacacca 127
Query: 213 -accacaccaagacgccaccaagggggtagagagggaggaggaaagtgggggagatca 269
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 taccacaccaagacaccaccaagggggtagagagggaggaggaaagtgggggagatca 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
