BAC Information

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BAC

Clone NameMSMg01-060F17
Chromosome2 (Build37)
Map Location 35,358,863 - 35,359,227
singlet/doubletsinglet
Overlap genenone
Upstream geneMapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042
Downstream geneLOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060F17.T7 (MSMg01no060_f17.b1)MSMg01-060F17.TJ (MSMg01no060_f17.g1)
ACCAG286819AG286820
length712816
length of high quality
(start - end)
368 (40 - 407)224 (79 - 302)
definitionCHROMAT_FILE: MSMg01no060_f17.b1 PHD_FILE: MSMg01no060_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:04 2005CHROMAT_FILE: MSMg01no060_f17.g1 PHD_FILE: MSMg01no060_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGACCGCGGAATTCTC
TCAGGTTTCTTCCTCAGCCAATAACTCATCCACAACCCTGTGGGCCCCTC
AGCTCCATGGAAGGTCCAGTCAATGAGGCGGATGAACTAAGCTTAGCACC
CTCATCAGAATCGCTGTCGCTCTCCAAGAGCTTATAAAACTTCACACATG
GCTTCCACATTAGATGTCCAACAGTCACCCCCCTCCCCCACTCCCAACCC
TGATTCTTAGTCTGCTGAAGTTCCAAGCCCTCCCCTAAGCTAACTGCTTC
TGCGGCAGTTATTTGACATTGGGCTCAGAATGTCATAGCTTGCTACCGCG
AAAACTTTTTTTCCTCTGGCTTATTTTTCCAGGTTGGGAGTCCGGGTTGG
CTCCCAGCCACCCCGTGGCTCTGCCATTGTAAACATATGACTCTCAAAAC
CATGCCAAGCACTGAGAGGGGCTGGGACCATGCGATGGGAGGTTTCCTGA
GCTAGGCCAGAGAGAAGGGCATTGGCTAACACAGAGGCAGGATCTGCTGC
CTCCTGCAAAGGATGCTGGGAGAGCAGCAGGCTATGGGTCCAGTGAGAGG
AAATGAATGAACTTGTGCGCACGCGCGCATGGTCTCAGCTCTCACAAATC
CCTGGATTTCTCTTCCTGACATGGTCTTAGCTCTTCACAAATCCCTGGCT
TTCTCTTCCTGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCCCCAACACCCAAGTGGTG
ACTTCATGGTGATGCGTTTGCAGAGGACCCTGGGTAAGTTCTCAGCACCC
ACATATAATGGCTCTCAACCTCTTGTAGCTCCAATTCCAGGAGATCACCA
TCTACTGACTTTTGTGGGTTCCTACACACACAAACTCATGCATACAAGCT
CATGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
ATTTTAAATCTCCACCCCAATATTTTTTCTTCCTATTTTCCTTTTTCCAT
CACTTCCCATTATCGTTTCATTCGTCCCCCTTTACGTTTATAACCCCCCC
CCACCTATTTCCCCTCTTTTAATTTTTACCCCCCCCCCCCCAAAGTATTT
TTTTTTTTCTCCTCTCTATATGCCTCTTTCCCCAATTTCATTAATTTTCT
AATACTTATCCCACTATCACAATTACTACTTTCACTTAAATGTTTTCTAT
AATAACTCCCTCCCTTCTTCATTTTTCTATACGCAATCCGCGCGTTTTAA
ATAATATTTCCCTTCTCTTTTTATTTCCGTCCATTTTAAAATTATTTTCC
CTGCTCCTTACCCTTCCTCCCCTAAAATAATACACAATTCGATATTTTTT
CCTTTATATAACATTACAATACAAACCCACAAGCTCCTATAATATACCCT
ATAATCCCAACCCGCATACAATCTCCTCCCCTCTTTTATACTTCTCCCCC
ATATTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_f17.b1 MSMg01no060_f17.b1 CHROMAT_FILE:
MSMg01no060_f17.b1 PHD_FILE: MSMg01no060_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:04 2005
         (368 letters)



>mm_chr2_35358660_35359427
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 6/368 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctcagg---tttcttcctcagccaataactcatccacaaccctgtgggcccct 60
           |||||||||||||   |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaattctctcaggacct---ttcctcagccaataactcatccacaaccctgtgggcccct 512

                                                                       
Query: 61  cagctccatggaaggtccagtcaatgaggcggatgaactaagcttagcaccctcatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagctccatggaaggtccagtcaatgaggcggatgaactaagcttagcaccctcatcaga 452

                                                                       
Query: 121 atcgctgtcgctctccaagagcttataaaacttcacacatggcttccacattagatgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atcgctgtcgctctccaagagcttataaaacttcacacatggcttccacattagatgtcc 392

                                                                       
Query: 181 aacagtcacccccctcccccactcccaaccctgattcttagtctgctgaagttccaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aacagtcacccccctcccccactcccaaccctgattcttagtctgctgaagttccaagcc 332

                                                                       
Query: 241 ctcccctaagctaactgcttctgcggcagttatttgacattgggctcagaatgtcatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctcccctaagctaactgcttctgcggcagttatttgacattgggctcagaatgtcatagc 272

                                                                       
Query: 301 ttgctaccgcgaaaactttttttcctctggcttatttttccaggttgggagtccgggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttgctaccgcgaaaactttttttcctctggcttatttttccaggttgggagtccgggttg 212

                   
Query: 361 gctcccag 368
           ||||||||
Sbjct: 211 gctcccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)